Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium77g00002 ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGAAAAGACATGGCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCTCTTCCGACGACTTATTCGTCGACGACCTTCTCGACTTTTCGCTCCTCGAAAACGAAGAACCTGACCAACACAAACACAGCCACCACTCAACCTCCGTTTCCCCTCGCAACGACAACCACCATATGTACAATTGCAACCACTCCTTCAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGACTCTTTCACCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCTGAGAAACCGCAGGAACCGGGAAACGCCGGTTTTACTTTCAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGGGTTCGGGTTTGGCCGCTGAGGTCACCCTCGTCTTTCACCGACACGTCGTCTCCCGACAGCCCTTTGGTAATTTGCGCAGCCACGTCCAAAGACCACCACCCGGAGGACAAGAGGGCGAAGAAACGGGCGGCGTCGGACGGGGGAGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCTCAATGGCGAACAGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAAAAGGAAGCGGGGCCTGGACCGGACACCGGTTCGCCAGCGTCGGTTCCCGGTTTTTGA 882 0.5567 MECLEAVLKSSFRKDMALKLSPQAFPEDLNMQNVTSSDDLFVDDLLDFSLLENEEPDQHKHSHHSTSVSPRNDNHHMYNCNHSFNDNFNTELTLPAEEVADLEWVSHFIEDSFTKYSLSFPATVTQSLAEKPQEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTDTSSPDSPLVICAATSKDHHPEDKRAKKRAASDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAGPGPDTGSPASVPGF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium77g00002 293 PIRSF Txn_fac_GATA_plant 5 285 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium77g00002 293 Gene3D - 203 278 IPR013088 GO:0006355|GO:0008270
Vium77g00002 293 Pfam GATA zinc finger 211 245 IPR000679 GO:0006355|GO:0043565
Vium77g00002 293 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Vium77g00002 293 MobiDBLite consensus disorder prediction 54 70 - -
Vium77g00002 293 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Vium77g00002 293 FunFam GATA transcription factor 200 284 - -
Vium77g00002 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 267 - -
Vium77g00002 293 CDD ZnF_GATA 210 258 IPR000679 GO:0006355|GO:0043565
Vium77g00002 293 MobiDBLite consensus disorder prediction 186 211 - -
Vium77g00002 293 MobiDBLite consensus disorder prediction 269 293 - -
Vium77g00002 293 PANTHER GATA TRANSCRIPTION FACTOR 28 288 - -
Vium77g00002 293 MobiDBLite consensus disorder prediction 187 206 - -
Vium77g00002 293 MobiDBLite consensus disorder prediction 54 74 - -
Vium77g00002 293 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium77g00002 Vium-Chr77 19783 21416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium77g00002 5 293 C2C2-Gata Transcription Factor Family AT5G66320 46.176 3.80e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium77g00002 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium77g00002 - - pvu:PHAVU_003G258900g 556.214