Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7788g00002 ATGTCCTTCCGCAGCATTGTTCGTGATGTGAGGGACGGGATTGGAAGCTTGTCAAGGCGGAGTTTTGACTTGAGGTTTTCTGGTGGCAGCAAGTCGAATAGTTCAGTCCATGAGGTGCATGAACGCCCTCCTGTTATACAGAATAGCAGGTGGGCTAGCCTTCCCCCTGAGCTTCTTCGCGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTTCTCGGAAGCATGTGGTTGCATGTGCTGCAGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGGGCCATTCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTGAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAAAGGACCAGAAGAACGACTTGCACAGAGTATATTATATCAATGGACGCGGACAACATATCAAGATCCAGTAGCACTTACATTGGAAAACTGAGGTCCAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAGCCTCCCTACAACAACGCTCAATTGTCTTCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCCAAGGTTCCTAGTGGCAGCTACAATATTGCCCAGATCACGTATGAGTTGAATGTCCTTGGTACTAGGGGCCCCCGCAGGATGAACTGCACCATGCACTCAATCCCTGTTTCAGCCCTTGAGCCTGGTAGCACCGTGCCCGGCCAGCCTGAGCTTCTTCCGCGTGCGCTGGAAGATTCCTTCAGGAGCATATCCTTTGCTAGATCAATTTACAGCTCAACTGATTTTAGCAGTTCTAGGTTCTCAGACATAGTTGTGGCAGGAAATGAAGAGGAGCAAGGAAAGGACATGCCTCTGGTTCTTAAAAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACTGTTGCATCTGTAAAGAATTTCCAGCTGATTGCTGCAACACAGCCACCGGCAGCCAGTGGTGGTGCTCCTCCTCCACCACCACCGACATCACAGCCACCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAAGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1290 0.4713 MSFRSIVRDVRDGIGSLSRRSFDLRFSGGSKSNSSVHEVHERPPVIQNSRWASLPPELLRDVIRRLEESETTWPSRKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSSPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPVSALEPGSTVPGQPELLPRALEDSFRSISFARSIYSSTDFSSSRFSDIVVAGNEEEQGKDMPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAASGGAPPPPPPTSQPPQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7788g00002 429 Pfam Tub family 112 424 IPR000007 -
Vium7788g00002 429 CDD F-box_AtTLP-like 51 95 - -
Vium7788g00002 429 Gene3D - 46 98 - -
Vium7788g00002 429 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Vium7788g00002 429 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Vium7788g00002 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Vium7788g00002 429 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Vium7788g00002 429 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Vium7788g00002 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Vium7788g00002 429 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Vium7788g00002 429 PANTHER TUBBY-RELATED 29 427 - -
Vium7788g00002 429 SUPERFAMILY Tubby C-terminal domain-like 100 429 IPR025659 -
Vium7788g00002 429 FunFam Tubby-like F-box protein 108 429 - -
Vium7788g00002 429 MobiDBLite consensus disorder prediction 363 386 - -
Vium7788g00002 429 Pfam F-box domain 51 97 IPR001810 GO:0005515
Vium7788g00002 429 MobiDBLite consensus disorder prediction 367 382 - -
Vium7788g00002 429 FunFam Tubby-like F-box protein 46 99 - -
Vium7788g00002 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Vium7788g00002 429 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Vium7788g00002 429 Gene3D Tubby Protein; Chain A 108 429 IPR025659 -
Vium7788g00002 429 SUPERFAMILY F-box domain 44 95 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7788g00002 Vium-Chr7788 3679 7622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7788g00002 1 429 TUB Transcription Factor Family AT1G76900 69.717 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium7788g00002 Tub 5.1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7788g00002 K19600 - gmx:100803729 752.281