Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7785g00003 ATGGAGGAGGACGACCTACTCGAACGACTCGACTTGGAGTTCGCGTCCACCAGTTCTGGCTCCGTCATTTCCTCCACACTCAGAACCGAAGATTTCCGGAACCTCAACAGCTCCGGCGACATTTCCTCCATCAGTAGTGGCTCCGGCGAGATTCCTCCTTCCGCAGTCACCGAGGCGGTACTCTCGCCGCCTCCGCTGCACCGCGCGGGGCTCAGTGACTGCGAGACACCGGCGGTGAGGGAGAAGTGCATCGGAAGGAGTAACAAGGGAGTGAGTTGGGGTCACACTTCGGTGATTGGAAGAAGGAAAGAGATGGAGGACGCTGTGGCAGTTATTCCCGGATTCATGTCTCGCACGTGCGATCACTTCGGCGGTTGTACCGCTCCCGGCTCCAGATCCTCCGGCGAGATCTCTCCCGTTCATTTCTTCGGCGTTTACGACGGCCATGGTGGCTCACAGGTGGCTAAGTTCTGTGCTAAGCGGATGCACGTTGTTATAGCAGAGGAGTGGAACCGAGAAATGGCAGGTGGGGCTGAGTGGCAGAGAAGATGGGAAACCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCAGACGAAGTTGCACCTGAAATGGTAGGATCTACTGCATCTGTGGTGGTTCTATCTGGTTGCCAAATTATTGCATCCAACTGCGGCGACTCAAGGGTAGTTCTTTTCCGCAGGACACAAACTATCCCCTTGTCAGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTATTTGAGACCATGGATTATTCCCGTGCCTGAGATAACTTTCACAGCTAGGACAGACGAGGATGAGTGCTTAATTTTGGCAAGCGACGGACTCTGGGATGTAATGAGCAATGAAGAGGTTGGAGAAGTGGCACGCCACATTCTTAGAAGACGACGCAGATCCTTGTCAGTGGAGGAACCGTCTCCTGCACAAGCTGTTGCCGACAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCCAAGAGAAAACGTCAGCAAAGGCCTGCTTTAATTTCCTAA 1176 0.5111 MEEDDLLERLDLEFASTSSGSVISSTLRTEDFRNLNSSGDISSISSGSGEIPPSAVTEAVLSPPPLHRAGLSDCETPAVREKCIGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCDHFGGCTAPGSRSSGEISPVHFFGVYDGHGGSQVAKFCAKRMHVVIAEEWNREMAGGAEWQRRWETVFANSFERTDNEILSDEVAPEMVGSTASVVVLSGCQIIASNCGDSRVVLFRRTQTIPLSVDQKPDRQDELLRIEGEGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMSNEEVGEVARHILRRRRRSLSVEEPSPAQAVADSLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPALIS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7785g00003 391 Gene3D - 82 388 IPR036457 -
Vium7785g00003 391 SUPERFAMILY PP2C-like 80 378 IPR036457 -
Vium7785g00003 391 PANTHER PROTEIN PHOSPHATASE 78 377 IPR015655 GO:0004722|GO:0006470
Vium7785g00003 391 ProSiteProfiles PPM-type phosphatase domain profile. 92 377 IPR001932 -
Vium7785g00003 391 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vium7785g00003 391 FunFam Protein phosphatase 2C 51 85 385 - -
Vium7785g00003 391 Pfam Protein phosphatase 2C 100 370 IPR001932 -
Vium7785g00003 391 CDD PP2Cc 94 377 IPR001932 -
Vium7785g00003 391 SMART PP2C_4 82 375 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7785g00003 Vium-Chr7785 12949 29008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7785g00003 93 387 PP2C-type Phosphatase Gene Family AT4G26080 51.111 1.62e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7785g00003 K14497 - gmx:100782634 648.277