Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7785g00002 ATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGATCCTAATACGAGACAAGTCACATTTTCAAAGCGTCGAACAGGTTTATTCAAAAAGGCGAATGAACTATCGATACTGTGCGGTGCAGAAATTGCAATTGTCGTGTTCTCTATTGGAAACAGACCTTACTCTTTTGGGCACCCAGGTGTCGATGCTGTTGCAGCCAAATTTCTTGAACATGAAATCGTCAAATCAAACGATGTCGAACAGAACAACGTAGAAGTTGGTGACATTGGTAGGTTGAATCAACAACTGTTAGATCTTGAAGCCCGAATACTTGTGGAGGAAAAGAAGGGCCTAGAGCTTGATCAGATACTAAAACAGCACCAACTGTCACAGCCTTCCCAATTTAAGCAATTACAAGATTCATATTTAGAATTCCAACTTAGGCTGAAAGATTACACTGATGCGATTGAGGTATCAGAATGTTTGATTCTACTTGCACAAGAACCCGTTGTCGAAATAACAAAACAGGTGAAGAAAAGAAGAAAGAATTGA 534 0.3989 MGRRKIEIAAVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDAVAAKFLEHEIVKSNDVEQNNVEVGDIGRLNQQLLDLEARILVEEKKGLELDQILKQHQLSQPSQFKQLQDSYLEFQLRLKDYTDAIEVSECLILLAQEPVVEITKQVKKRRKN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7785g00002 177 PANTHER MADS BOX PROTEIN 3 134 - -
Vium7785g00002 177 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Vium7785g00002 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium7785g00002 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium7785g00002 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium7785g00002 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium7785g00002 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Vium7785g00002 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium7785g00002 177 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Vium7785g00002 177 Coils Coil 90 110 - -
Vium7785g00002 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7785g00002 Vium-Chr7785 6221 6754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7785g00002 1 161 Type I MADS-box Gene Family AT2G34440 40.230 3.27e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium7785g00002 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7785g00002 - - gmx:100791127 251.136