Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium777g00008 ATGAGCGTTCCTCCGCCGTCCACGGCGGCGATGTGGACGCCGTTCACGGCGGCCCAGTGGCACGAGCTGGAGCACCAGGCTCTCATCTTCAAGTACCTCAAGGCGGGGCTCTCCGTTCCGCCCGACCTCCTTCTCCCCATTCGCAAGAGCCTCCAATTCATGGCACACCCATCTCTTGGGGGGTACTATGGGAAGAAGATAGACCCTGAACCGGGTCGGTGCAGGAGAACCGATGGGAAGAAGTGGAGGTGTTCGAGGGATGCTCACCCTGACTCCAAGTACTGCGACCGCCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTCACTCTTCTTCTGCTTCTTCAAACCCTGTTGCTGCTTCTGCTTCTGCTGCTTCCTCTGCAACGGGTTCTGCTACATCTTCTGCAACTGGTTCTGCTGCTGCATCTGCGACAACCCTCAACACCCTTCCTTTGCATACCAATGGTGCTCGGGAGGGTTTCACTTTCACCCTTGGGAACAGCGCCACCACTGCCACACCCACACTCCCCCACCTTCACATGGACCCCCTCACTCTTTCAGGTGACAACACCAAGAAAACTTACCGGTTTGGACTGAACTCAGAAGCAGATGAACACGTCTTACAGAAAGATCTGGGAAGTGTGAGATATCAAGGTTATGACTTCACCTCAGACAGCATGTGGTCTCATATGTCTCCAATTCCATCAAGTACTGTTTCGGAATCGAGAAGTGGTTCTACCATGCTGGGCAACTGCTTCCAACAGCAAACAATGCGAGATGCCGAGCTGTTGAACCTTGAAACTGCAAGGACCAAAGACCTTATATTTAGTAGCCAGTTAAGTTCAGCAGGTAGTTTGAAACAGGAATATCAGTCTCCTCAGTCTCTCTTCAGTGACTGGGACTGGAAGAAGGATTTAACTTCCTCTGCCATCGAGTATAGACCCAACAAGGATTTTAACTGCAATCCAGATGCCAATGTTGATTAA 1005 0.5144 MSVPPPSTAAMWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFMAHPSLGGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQPHSSSASSNPVAASASAASSATGSATSSATGSAAASATTLNTLPLHTNGAREGFTFTLGNSATTATPTLPHLHMDPLTLSGDNTKKTYRFGLNSEADEHVLQKDLGSVRYQGYDFTSDSMWSHMSPIPSSTVSESRSGSTMLGNCFQQQTMRDAELLNLETARTKDLIFSSQLSSAGSLKQEYQSPQSLFSDWDWKKDLTSSAIEYRPNKDFNCNPDANVD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium777g00008 334 PANTHER GROWTH-REGULATING FACTOR 5 13 306 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium777g00008 334 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium777g00008 334 MobiDBLite consensus disorder prediction 68 124 - -
Vium777g00008 334 Pfam QLQ 14 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium777g00008 334 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium777g00008 334 ProSiteProfiles WRC domain profile. 68 112 IPR014977 -
Vium777g00008 334 Pfam WRC 69 111 IPR014977 -
Vium777g00008 334 MobiDBLite consensus disorder prediction 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium777g00008 Vium-Chr777 85558 89082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium777g00008 14 111 GRF Transcription Factor Family AT3G13960 59.633 5.84e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium777g00008 WRC 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium777g00008 - - gmx:100809947 542.732