Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7775g00010 ATGGCAGAAACTGCAGTGTCTTTTGCTAGTCAGCATGTGCTTCCAAAATTTTTGAAAGCTGTAAAGATGCTGAGAGATCTACCAAAAGAAGTAGCAGAAGTTACGGATGAACTAGAAAGCTTTCAAGATTTCATCCAAGATGCAGATAAAGTGGCTGAAGCTGATGATGATAAAAATAGGCGTGACAGAATAAGGAAAAGGATGATGAGACTGAGAAAAGCAGCTGTTTGCATGGAGGATGTCATCGATGACTATGTTATCTGCAACGAAAAGCAATCTGAACAAGATCCTCGGTGTGCAGATTTACTCTGTGAGGCCGTTGAGTTCATCAAAACTCAAATCCTTCGCCTTCAAATAGCGTATCGGATTCAGGATGTTAAGACACTTGTTCATGCCGAAAGAGATGGCTTCAAAAACCATTTTCCTATAGGACCAAGATCAGACGGTTCTAGAGGAAATGAAAACTTCACATGGCAGAAACTTCGAATCGATCCTCTCTTTATTAAGGAAGACGAGGTTGTTGGATTTGAAGGCCCTATACATACATTGAAAAAGTGGTTGACAGAGGGAAGAAAAGAACAACGCACTGTCATCTCTATTGTAGGAATGGCAGGATCGGGAAAAACCACTCTTTCTAAGCAAGTTTTTGACAGAGTCAAAGACTTTGAGTGCCATGCGTTGATCACAGTGTCTCGATCCTACACTGTTGAAGGGCTACTGAGGGATATGATTAAAGAACTTTGCGAAGAAAGAAGAGAGAATCCTCCTCCCGCTGTTCAAACTATGAATCGAATTTCGTTGATAAAAGAAATCAGAAACCGCTTATGCCACAAGAGGTATGTTATTTTGTTTGATGACGTATGGAATGAAACATTTTGGGATGACATTGAATTGGCTCTGATTGATAATGAAAATGGAAGTAGGATATTAATCACTACTCAGGATGATAAAGTTGTGAAGTTCTGTAAAAAAGCTGTATTTTTTGAGGAGCATAAGTTACAACCTTTAAGTCAAGAAAAATCATTGGTGTTGTTATGTAAGAAGGCGTTTGGAAAGGATTTTGATGGATGTTGTCCAAAAGATTATGAAGAAGTAGGTCTGGACATTGTTAGGAAGTGTGGATGTTTACCTCTGGCAATTGTAGCTATCGGTAGTCTTTTGTATAGAAAATGTAAAAGTCCATCTGATTGGGGCCTGTTTAGACAAAATTTAAGTTTAGAGATGGAGAGGAATCCCGAGTTAGACAGTGTAAAAAAAATTTTAAGTTTGAGTTACGAAGATTTACCACAGAATCTTAGGTCATGTTTGTTATATTTCGGAATGTATCCAGAAGATTGCGAAGTTAAATGTGGTAGATTAATTGAGCAGTGGATAGCTGAAGGGTTTGTGAAACATGAAAGTGGAAGAAATCTAGAAGAAGTTGCGCAACAACATTTAATGGAGTTGATCAGTCGAAGTTTGGTACTAGTATCATCATTTACCACAGATGGCAAAGCTAAAGCATGTCGTGTTCATGACTTAATACATGAAATGATCCGTGGAAAAATGAAGAATACGGATTTTTGTCACAATATTGATGAGCATAATCATTTGGAGTCAAGTGGTATCATTCGACGCTTAACAATAGGAAGAAATTCCAATTGTTTAAGTGGATCTATCGAAGAATCACAATATGTTCGGTCAATTCTAATATTTACAGATGAAGTGTCATCGAAAGACTTCACCAGGCGCTTGGTTGCAAAATACATGCGATTGAAGGTGCTGGATTTTGAATATGCTCCATTATATGATGTTCCTGAAAATTTGGGGAGTTTAATCCACTTAAAGTATCTAAGTTTTCGGGGTACATCGATAAAAGGCCTTCCAAAATCCATTAGTAAGCTCCAGAACTTGGAGACCCTAGATGTACGAACAGATAAGGAGATTGAGATACCGAAGGAGATTACCAAGCTGAGAAAGCTACGTTGTCTATTGGGCAGCCTACTATCTTCCATTGAAGTGAAGGATAGTCTTGGGAGCATAACATCCCTGGAAAAGATGCATTTATTGATAATAGATCCAAATGGAGTAGTTATTAGGGAGCTTGGAAAGCTAAAGCAATTAAGGGATCTGAGGCTTGTTAATCTTAGGGGAGATCATGCGGATACTCTTTGTTCCTCAATAAACGAGATGCCACTCTTGGAGCGACTGCATATCTCCTTACAATATGGGACTGAAGCAATTGACTTGCACATTAGGTTATCCTTGTTTAAACTAAGGGAGCTTCTTCTATGGGGCAAATTAAAAGAGTTCCCAAATGGGATTCCACTGTTCCAAAATCTTGTGAGTTTGACATTGATTCATTCCGCGTTAACTAACATTCCGTTGATATCTTTGGGAAATATGCCAAATTTGTTGATCCTCGTTTTCGGCCTCTCTTCTTATGAAGGAGAAACTTTACATTTTCAAAATGAAGGATTTCTAAAACTAAAGGAACTGGGGTTTACTAGTTTGTATGATTTGAGGTCCGTCTTTATTGATAGCGGGGCACTGCAATCTTTGGAAAAGCTTACGATAATGAATATTCCACAACTGAATGCGGTACCCTCTGGCATTCAACACTTAAAGAAACTCCAATATCTCTGGATCTGTTATATGTCGACTGCATTTCACCAGAGGATTGACCCCAATGGAGGAGAAGAGTATTTCATGGTCAAACATGTGCCCTATCTACATATTGAAACACACTGTCCTGTTTTATAG 2742 0.3848 MAETAVSFASQHVLPKFLKAVKMLRDLPKEVAEVTDELESFQDFIQDADKVAEADDDKNRRDRIRKRMMRLRKAAVCMEDVIDDYVICNEKQSEQDPRCADLLCEAVEFIKTQILRLQIAYRIQDVKTLVHAERDGFKNHFPIGPRSDGSRGNENFTWQKLRIDPLFIKEDEVVGFEGPIHTLKKWLTEGRKEQRTVISIVGMAGSGKTTLSKQVFDRVKDFECHALITVSRSYTVEGLLRDMIKELCEERRENPPPAVQTMNRISLIKEIRNRLCHKRYVILFDDVWNETFWDDIELALIDNENGSRILITTQDDKVVKFCKKAVFFEEHKLQPLSQEKSLVLLCKKAFGKDFDGCCPKDYEEVGLDIVRKCGCLPLAIVAIGSLLYRKCKSPSDWGLFRQNLSLEMERNPELDSVKKILSLSYEDLPQNLRSCLLYFGMYPEDCEVKCGRLIEQWIAEGFVKHESGRNLEEVAQQHLMELISRSLVLVSSFTTDGKAKACRVHDLIHEMIRGKMKNTDFCHNIDEHNHLESSGIIRRLTIGRNSNCLSGSIEESQYVRSILIFTDEVSSKDFTRRLVAKYMRLKVLDFEYAPLYDVPENLGSLIHLKYLSFRGTSIKGLPKSISKLQNLETLDVRTDKEIEIPKEITKLRKLRCLLGSLLSSIEVKDSLGSITSLEKMHLLIIDPNGVVIRELGKLKQLRDLRLVNLRGDHADTLCSSINEMPLLERLHISLQYGTEAIDLHIRLSLFKLRELLLWGKLKEFPNGIPLFQNLVSLTLIHSALTNIPLISLGNMPNLLILVFGLSSYEGETLHFQNEGFLKLKELGFTSLYDLRSVFIDSGALQSLEKLTIMNIPQLNAVPSGIQHLKKLQYLWICYMSTAFHQRIDPNGGEEYFMVKHVPYLHIETHCPVL 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7775g00010 913 FunFam Probable disease resistance protein At1g61300 160 325 - -
Vium7775g00010 913 Pfam Rx N-terminal domain 5 94 IPR041118 -
Vium7775g00010 913 Gene3D - 425 516 IPR036388 -
Vium7775g00010 913 PRINTS Disease resistance protein signature 274 288 - -
Vium7775g00010 913 PRINTS Disease resistance protein signature 626 642 - -
Vium7775g00010 913 PRINTS Disease resistance protein signature 373 387 - -
Vium7775g00010 913 PRINTS Disease resistance protein signature 197 212 - -
Vium7775g00010 913 PANTHER DISEASE RESISTANCE PROTEIN RP 31 847 IPR044974 GO:0006952
Vium7775g00010 913 Gene3D Ribonuclease Inhibitor 545 890 IPR032675 -
Vium7775g00010 913 Gene3D - 335 424 IPR042197 -
Vium7775g00010 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Vium7775g00010 913 Pfam NB-ARC domain 179 427 IPR002182 GO:0043531
Vium7775g00010 913 Gene3D - 165 328 IPR027417 -
Vium7775g00010 913 SUPERFAMILY L domain-like 503 879 - -
Vium7775g00010 913 Gene3D - 4 120 - -
Vium7775g00010 913 FunFam Probable disease resistance protein At1g63360 425 513 - -
Vium7775g00010 913 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7775g00010 Vium-Chr7775 132444 138148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7775g00010 198 394 WRKY Transcription Factor Family AT5G45050 28.500 2.98e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7775g00010 K13457 - gmx:100799057 983.015