Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7775g00005 ATGACTGCTGGGAGAGGGATTGTGCACTCAGAAATGCCTGTTGCACAAGGAACACAAAAGGGTCTTCAATTGTGGATCAACCTTGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAGGTGTTGAGTAAGGACATAGCAGAAGCTGAGGATGATGATGGTGTGAAGGTTAGAGTTATAGCTGGGGAATCACTGGGGATAAAGTCTCCAATCTACACAATGACTCCAACCATGTTCTTGGATTTCTCTCTCAAACCTGGAGGACACTTGCAGCAACCTATACCAGAAACTTGGAATGCTTTTGTGTATATATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAACCTTCAAATTCTCACCATATTCTTCTTCTTGGCCATGGTGATGGTCTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATATTGGTTGGAGGAGAGCCTTTGGGGGAACCTTTAGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAGGAGATTGACCAAACCATTAATGATTTTGAGAAGTTTGCTAATGGATTTGAGAAAGCAAGAGATTGGAGATCTGAAAAGGATATGAATTAA 600 0.4117 MTAGRGIVHSEMPVAQGTQKGLQLWINLASKYKMIEPRYQEVLSKDIAEAEDDDGVKVRVIAGESLGIKSPIYTMTPTMFLDFSLKPGGHLQQPIPETWNAFVYILEGEGIFGNMKSQPSNSHHILLLGHGDGLEAWNKSSKLLRFILVGGEPLGEPLVQFGPFVMNTQEEIDQTINDFEKFANGFEKARDWRSEKDMN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7775g00005 199 Gene3D Jelly Rolls 1 38 IPR014710 -
Vium7775g00005 199 SUPERFAMILY RmlC-like cupins 1 194 IPR011051 -
Vium7775g00005 199 PIRSF Pirin 1 193 IPR012093 -
Vium7775g00005 199 Pfam Pirin C-terminal cupin domain 80 184 IPR008778 -
Vium7775g00005 199 CDD cupin_pirin_C 77 153 - -
Vium7775g00005 199 PANTHER PIRIN-RELATED 1 196 IPR012093 -
Vium7775g00005 199 Gene3D Jelly Rolls 39 154 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7775g00005 Vium-Chr7775 100700 103304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7775g00005 1 195 Calmodulin-binding Proteins AT1G50590 65.196 5.10e-88 257