Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7775g00004 ATGCCACATAGAAAAGGTTGCAGTGTTTTTAATGACCCTTGTTTTGTTGCCAAGAAATTCTTGGCAAGACCTCAGCATGAGGGAGTTGGAGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTATGCTGGATGAATTCTCAGTTACTGCTCCTGCTGGTTTTCCTGATCATCCTCATAGAGGCTTTGAGACAGTCACATACATGTTGCAGGGAGCTATCACGCATGAAGATTTTGAAGGACATAAAGGGACTATAGAAGCTGGTGACTTGCAATGGATGACTGCTGGGAGAGGGATTGTGCACTCAGAAATGCCTGTTGCACAAGGAACACAAAAGGGTCTTCAATTGTGGATCAACCTTGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAGGTGTTGAGTAAGGACATAGCAGAAGCTGAGGATGATGATGGTGTGAAGGTTAGAGTTATAGCTGGGGAATCACTGGGGATAAAGTCTCCAATCTACACAATGACTCCAACCATGTTCTTGGATTTCTCTCTCAAACCTGGAGGACACTTGCAGCAACCTATACCAGAAACTTGGAATGCTTTTGTGTATATATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAACCTTCAAATTCTCACCATATTCTTCTTCTTGGCCATGGTGATGGTCTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATATTGGTTGGAGGAGAGCCTTTGGGGGAACCTTTAGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAGGAGATTGACCAAACCATTAATGATTTTGAGAAGTTTGCTAATGGATTTGAGAAAGCAAGAGATTGGAGATCTGAAAAGGATATGAATTAA 900 0.4189 MPHRKGCSVFNDPCFVAKKFLARPQHEGVGAVVRRSIGRFELKYFDPFLMLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPVAQGTQKGLQLWINLASKYKMIEPRYQEVLSKDIAEAEDDDGVKVRVIAGESLGIKSPIYTMTPTMFLDFSLKPGGHLQQPIPETWNAFVYILEGEGIFGNMKSQPSNSHHILLLGHGDGLEAWNKSSKLLRFILVGGEPLGEPLVQFGPFVMNTQEEIDQTINDFEKFANGFEKARDWRSEKDMN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7775g00004 299 Gene3D Jelly Rolls 148 254 IPR014710 -
Vium7775g00004 299 FunFam pirin 27 165 - -
Vium7775g00004 299 SUPERFAMILY RmlC-like cupins 16 294 IPR011051 -
Vium7775g00004 299 CDD cupin_pirin_N 31 128 - -
Vium7775g00004 299 Pfam Pirin 33 126 IPR003829 -
Vium7775g00004 299 PIRSF Pirin 13 293 IPR012093 -
Vium7775g00004 299 CDD cupin_pirin_C 177 253 - -
Vium7775g00004 299 Gene3D Jelly Rolls 27 280 IPR014710 -
Vium7775g00004 299 Pfam Pirin C-terminal cupin domain 180 284 IPR008778 -
Vium7775g00004 299 PANTHER PIRIN-RELATED 10 296 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7775g00004 Vium-Chr7775 93542 97064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7775g00004 13 290 Calmodulin-binding Proteins AT3G59220 59.286 7.94e-121 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7775g00004 K06911 - gmx:100802484 542.347