Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7771g00001 ATGGGAATTCAAAAACATATGGTTAACGTAAAGGCTAGCTTAGGTGTTCTTGTGGTTCTTCTTCTTGTAGCAGCAGTCAGTCCTTTGGAAAAGAAGGAAACAGAAGATGATTTTGTTAGAAAGTTACTTGATCCAGCATCTGGGTTGTTCGATGAACACACGGCAAAAGTCTTATGGAAATATTGCAGGAAAGGTTTATTTCATTTAGTGAAAGATGTTGAGAACCATGATTTGTGTCTTTCATGGGAATTATCTGGCAGCGCCAATATAATCAGCTCAGAGATTCAACCATTAGAACGAGAAGAGACCAAAAAATTTATCAATGCTTACTGTTCTCAATTCAAGGACAACATTCTTCACTGTTTTGGAAAAGATAATCCCCCATTACCTGATTCAGGAAAAGAGGATGATTCCAATATTTGGCATGTCACTTATATGGCACCACTTTTTTCCAAATCCAGTGCTCCTACGAGAAATTTTGGTCGTATTTTGCTCCAGCACATATCAGAACCACCTAGTCCAGGCCCTGCACCTAGTTTAGCACCATCTTCTGAACCCAGTCCAGCACCATCATCTGAACCCAGTCCAGTACCATCACCTCATTCTCCAGTACATAATCTTCCTAGACCACTGCAACCTTCTGCACCAACACCTTTTTTTCCAAAATTGACACCACCAGCAGCTTCAGATATTTCTGCTCCTCCATCTCCGGAAGTTGACAAACAGGAAGATAGTCACAGTAATAAAAAAACAGTTGTTCTTGCAGTAGTTATAACTGCATTGGTGACATTTATAGCTGCAGCACTGCTCTTTTTATGCTGGAGGCGGCATCAGAGGACTGGCCATGTTAGACTAAATGATGATAGGCCTCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTTTTCTTTTGGGAATTCAATGAAAGGGAAGAAACCTGGGTTTCAGTCAGCTAGTAATAGTTTAGTAGACAATAAGTATACTGTGCAAGAAAGTCAATCAATAGGAGTTCATAATGCTGCTACAGGGTCACCATTTGAACTGAAACCTCCTCCCGGGAGGATGGGAATCATTCCTTCTGGAATGCCTCCCTTAAAGCCTCCACCAGGAAGGTTAAACCCTCCTCCAGGCAGATTAAACCCGCTTCCTCCTGAGCCACCTTCATTTAGGCCTTTGGATGCTGCAGCTCCTCCAGCATCTACCACTACTGTTGCTGCAGTTCCTCCTCCTGCCCCTCAAAAGCCTGCTAGCATTCCACCTACTCGACCACCTCAACCACCAATGGGTGCCAAACCTAGCCCACCTCCACCAGCACTAGCTGGTTCCAGACCAGGTCCTCCTCCACCACCTCCAGCACTAGCTGTTTCCAGACCTGGTCCTCCTCCTCCACCACCCCAGGCACCAGCTGCTATTAAACCTGGTCCTCCTCCACCACCACCACCCCTAGTACCAGGTGGTTCCAAACCTGGTCCTTGGCCACCACCACCACCACCTGTTAATGGCGTAGCTCCTCCTCGACCTCCTCCATTTGGCTCAAAGGTGCCCCAGCCTTTGGCTAGTGGATCAAAAGCTACAGTTGCAAGTGAAGTTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCATTCCAATTTAATGAGGAAATGATAGAGACGCTTTTTGGCTATAATGCTGTGGATAAGAACAATGGTCAAAGACAGAAAGAGTCTTCCTCTCTAGACCCTTCACCTCAGTTTGTCCAGATCATTGACAAAAAGAAAGCACAAAATTTATTGATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGCGATGCGCTTTATGAGGGACATGAGCTACCCCCAGAGTTCCTTCAAACTTTGCTAAAGATGGCACCAACATCAGATGAAGAACTTAAGCTCAGACGTTTTAATGGTGATCTATCTCAACTAGGTCCTGCTGACAGTTTCCTCAAAACCCTGGTTGATATTCCATTTGCATTCAAAAGAATGGAAGCTCTGCTTTTCATGGGCTCATTTAAAGAGGAGCTTGGAACTACTATGGAGTCTTTTTACATTTTGGAGGTTGCTTGTAAGGAGCTAAGAAGTAGCCGGCTATTTCTGAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAATCGAATGAATGATGGAACTTTCCGTGGTGGTGCTCAAGCATTTAAACTTGATACACTTCTGAAATTGTCTGATGTAAAAGGAACAGATGGGAAGACTACACTCTTACACTTTGTTGTTCTAGAGATTATCCGTTCTGAGGGAATAAAAGCCGTCAGAAAGTCCAAAGATAGCCAGAGTTTGTCTATTATTAAATCAGATGACCTTCAGGATAGTATTCAAGAAACAGAAGATCACTACCATGAAATTGGCCTTCAGGTGGTTTCACACTTGAGCAGTGAACTTGAGAATGTGAAAAAAGCAGCAGTTCTAGACGCTGACAGTTTAACAGGAACCACTGTCAAACTCGGTGAAGGTCTCGTAAACACGCGAGACTTGATAAATAAAAACATGAAGAATGTGGAGGAAGACAGGGGGTTTTGTGAGACAGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTAAGAAACTGCTGGAAGAGGAGAAGAAGATCATGGCTTTGGTGAAGAACACTGGTGATTACTTTCATGGGAATGCTGGGAAGAATGAAGGCTTAAGGCTGTTCATAGTAGTACGGGACTTCTTACTAATGCTGGATAAAATATGCAAGGAGTTGATAGACACACAGAAGAAGCAAGCAAAAACGGTAAAACAAGAGAATCCCCGGGGACAGTCTTCCTCCGAAACACGGCCACCACCTGATCTTCGACAGCGGCTCTTCCCAGCCATTGCTGAAAGGAGGATGATTGACATTAGTTCAGATGATGAGAGTCCATAG 2991 0.44 MGIQKHMVNVKASLGVLVVLLLVAAVSPLEKKETEDDFVRKLLDPASGLFDEHTAKVLWKYCRKGLFHLVKDVENHDLCLSWELSGSANIISSEIQPLEREETKKFINAYCSQFKDNILHCFGKDNPPLPDSGKEDDSNIWHVTYMAPLFSKSSAPTRNFGRILLQHISEPPSPGPAPSLAPSSEPSPAPSSEPSPVPSPHSPVHNLPRPLQPSAPTPFFPKLTPPAASDISAPPSPEVDKQEDSHSNKKTVVLAVVITALVTFIAAALLFLCWRRHQRTGHVRLNDDRPLLSLSMSDYSVGPSSFSFGNSMKGKKPGFQSASNSLVDNKYTVQESQSIGVHNAATGSPFELKPPPGRMGIIPSGMPPLKPPPGRLNPPPGRLNPLPPEPPSFRPLDAAAPPASTTTVAAVPPPAPQKPASIPPTRPPQPPMGAKPSPPPPALAGSRPGPPPPPPALAVSRPGPPPPPPQAPAAIKPGPPPPPPPLVPGGSKPGPWPPPPPPVNGVAPPRPPPFGSKVPQPLASGSKATVASEVDAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESSSLDPSPQFVQIIDKKKAQNLLILLRALNVTMEEVCDALYEGHELPPEFLQTLLKMAPTSDEELKLRRFNGDLSQLGPADSFLKTLVDIPFAFKRMEALLFMGSFKEELGTTMESFYILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAVRKSKDSQSLSIIKSDDLQDSIQETEDHYHEIGLQVVSHLSSELENVKKAAVLDADSLTGTTVKLGEGLVNTRDLINKNMKNVEEDRGFCETVKSFVQNAEADVKKLLEEEKKIMALVKNTGDYFHGNAGKNEGLRLFIVVRDFLLMLDKICKELIDTQKKQAKTVKQENPRGQSSSETRPPPDLRQRLFPAIAERRMIDISSDDESP 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7771g00001 996 Coils Coil 885 905 - -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 171 232 - -
Vium7771g00001 996 PANTHER FORMIN-RELATED 241 983 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium7771g00001 996 SMART it6_source 531 951 IPR015425 -
Vium7771g00001 996 Pfam Formin Homology 2 Domain 533 936 IPR015425 -
Vium7771g00001 996 ProSiteProfiles Formin homology-2 (FH2) domain profile. 531 962 IPR015425 -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 407 518 - -
Vium7771g00001 996 SUPERFAMILY Formin homology 2 domain (FH2 domain) 601 964 - -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 956 970 - -
Vium7771g00001 996 Gene3D Formin, FH2 domain 536 968 IPR042201 -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 951 977 - -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 340 530 - -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 360 397 - -
Vium7771g00001 996 MobiDBLite consensus disorder prediction 167 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7771g00001 Vium-Chr7771 2866 9882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7771g00001 467 986 FH2 protein (formin) Gene Family AT5G54650 59.429 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7771g00001 - - gmx:100793413 852.047