Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7763g00001 ATGTTTCACACAAACATGTTTGATTCTCACCCTCACATGCTTGATATGTCACCCCACAAAACTGCTTTCTCTGAGACTGACCTGGGAAAGCCCAGAGATGATGAATATGAGACCAAGTCAGGCACTGACATGGACGCTCCTTCCGGCGACGACCAAGATCCCAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAGATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTAGGCCGGGATTTGGGGTTAGAACCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAGCATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAACGAAAAGCTTCGAGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCCCTTGGCGAAATGTCCTTCGACGAACAGCACTTGAGGATTGAGAACGCTCGGTTAAGAGAAGAGATCGATAGGATTTCAGGAATTGCGGCCAAGTACGTTGGAAAGCCCGTGACGTCTTCGTACTCCAACCTTTCGTCACTCAACAACAATCACATGCCTGTCGGTAACTATGGAGCACAGTCAGGCACGGTAGGAGAAATGTACGGTGGAAGTGACCTTTTGAGGTCACTCCAAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTCGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACTCTTTATGGGTCCCCGGGAGCCACCACTCTGAGATTTTGAACGAAGAAGACTATTTGAGGACTTTCCCTAATAGGGGTTTAGGTCCCAAACCTCTGGCCTTGAGATCTGAAGCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTGATTGATATCCTTATGGATGTGAACCAATGGTCAACTATGTTTTGCGGTATTGTCTCAAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCCGAGTTCCAAGTCCCTTCACCGCTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCAGTGGTGGATGTTTCTTTGGATAATCTGCGACCCAGTACGATCTCAAGAAGCCGAAGAAGACCCTCTGGATGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATCGAACATGTAGAAGTGGATGATAGGGCGGTGCATAGCATATATAAAACCCTAGTCAATTCCGGTCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGAATCTCTGTGTGATAACCAGTGCTGAGGGAAGAAAAAGTATGCTGAAACTGGCAGAGAGAATGGTTATTAGCTAATGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACTCTATCCGCAACTGGATGTGATGACGTAAGGGTCATGACTAGAAAGAGCACTGATGAACCTGGCAGACCACCCGGCATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAAGGTTTTTGATTTCCTACGCGATGAAAACTCAAGAAACGAGTGGGACATTCTTTCTAATGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGCCGTGATCCTGGCAACTGTGTCTCCCTACTTCGAGTCAATAGTGCAAATTCAAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTCTACTGGCTCGTATGTAGTTTATGCTCCTGTGGATATTGTAGCTATGAATGTAGTAATGGGTGGAGGGGATCCAGATTATGTTGCCCTGCTTCCCTCAGGCTTTGCTATTCTTCCTGATGGGCCTGGAATGAATGGTGGGTCAATAGTTGATGTTGGATCAGGAGGTTCTCTACTCACAGTTGCCTTCCAGATCTTGGTTGATTCAGCTCCAACAGCAAAACTATCTTTGGGTTCAGTTGCTACTGTTAACAGTCTAATTAAGTGCACGGTTGAAAGGATCAAGGTCGCAGTGATACGTGACAACACCTAA 2181 0.4723 MFHTNMFDSHPHMLDMSPHKTAFSETDLGKPRDDEYETKSGTDMDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELGRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHMPVGNYGAQSGTVGEMYGGSDLLRSLQAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGSHHSEILNEEDYLRTFPNRGLGPKPLALRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGNLCVITSAEGRKSMLKLAERMVISXCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVMGGGDPDYVALLPSGFAILPDGPGMNGGSIVDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNT 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7763g00001 726 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Vium7763g00001 726 SUPERFAMILY Bet v1-like 488 717 - -
Vium7763g00001 726 Gene3D - 47 133 - -
Vium7763g00001 726 CDD homeodomain 60 118 IPR001356 GO:0003677
Vium7763g00001 726 SMART START_1 247 467 IPR002913 GO:0008289
Vium7763g00001 726 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Vium7763g00001 726 FunFam Homeobox-leucine zipper protein GLABRA 2 247 466 - -
Vium7763g00001 726 MobiDBLite consensus disorder prediction 25 58 - -
Vium7763g00001 726 FunFam Homeobox-leucine zipper protein HDG1 48 133 - -
Vium7763g00001 726 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Vium7763g00001 726 Pfam START domain 248 467 IPR002913 GO:0008289
Vium7763g00001 726 CDD START_ArGLABRA2_like 242 466 - -
Vium7763g00001 726 SUPERFAMILY Bet v1-like 239 469 - -
Vium7763g00001 726 Coils Coil 111 146 - -
Vium7763g00001 726 SUPERFAMILY Homeodomain-like 44 117 IPR009057 -
Vium7763g00001 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 721 IPR042160 -
Vium7763g00001 726 Gene3D - 306 468 IPR023393 -
Vium7763g00001 726 SMART HOX_1 59 121 IPR001356 GO:0003677
Vium7763g00001 726 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7763g00001 Vium-Chr7763 2972 6671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7763g00001 1 724 Homeobox Transcription Factor Family AT4G04890 77.181 0.0 1163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium7763g00001 START 1.4e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7763g00001 K09338 - gmx:100815499 1341.64