Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7761g00012 ATGTTGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATAGGAAGCACATCTAAGCGGGGTGCAGAAAGCAAGCTACGGCTCAGTCGAACAAAGTCACATATTGCTCCAGATGTTCTTGCAACTACATTTGAATTTATTCAACAGGGACAATGGGCAAATCTTCCACAAGAATTACTTTTTGACATAATCCAAAGGGTTGAAGAGAGTGAAACATCTTGGCCTGACCGAGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCTTGGAGGTCGATTACAAAAGAGATTGTCAAGACTCCGGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCGCGTGATTCTCCAATACAGTGCTTTATAAGGAGGAACAAAGAAAGTTCTACATATCTGTTGTACTTTGGTCTGGTACCATCAGAGAATGACAATAACAAGTTATTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTGTCATATCCTTGGCCACAGATGATTTTTCCCGAGCCAGCAATAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATACATGACAGTCAACCTCCCCATGATGCTGCAATTCAACCCAATTGTCAATCTAGTAGGAGATTTCATTCTAAGCAGGTCTCACCAAGAGTTCCAGCTTGTAGCTACCTTGTTAGCACAGTTTCCTACGAGCTGAACGTCCTTTGCACTAGAGGGCCAAGAAGAATGCATTGTGTCATGAACTCTATACCCGTCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCAACTTCTTTCCCTCAAATATTTGATGAATCTTTTTCTCCATCACCAGCACCGAAAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAGCTTATCAGAGCCACTAATATCGAGCCAAGTTTCAACTGAGCAATTAGAACTGAAAAACAAGGCTCCACGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTGTCTGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCTCATAACATTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCGCTCTCTACCTTCCAAGCCTTTGCCATATGCTTGAGTAGCTTTGACACAAAACCTGCCTGTGAATGA 1245 0.4305 MLLRSIVRELKEMRDGIGSTSKRGAESKLRLSRTKSHIAPDVLATTFEFIQQGQWANLPQELLFDIIQRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKESSTYLLYFGLVPSENDNNKLLLAAKRIRRATGTDFVISLATDDFSRASNKYVGKLRSNFLGTKFTIHDSQPPHDAAIQPNCQSSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDESFSPSPAPKEKVPVPDLNSASLSEPLISSQVSTEQLELKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7761g00012 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Vium7761g00012 414 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515
Vium7761g00012 414 PANTHER TUBBY-RELATED 44 412 - -
Vium7761g00012 414 Pfam Tub family 116 409 IPR000007 -
Vium7761g00012 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Vium7761g00012 414 CDD F-box_AtTLP-like 55 99 - -
Vium7761g00012 414 Gene3D - 48 101 - -
Vium7761g00012 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Vium7761g00012 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Vium7761g00012 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Vium7761g00012 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7761g00012 Vium-Chr7761 58924 67714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7761g00012 1 414 TUB Transcription Factor Family AT2G18280 61.905 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium7761g00012 Tub 3.4e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7761g00012 K19600 - gmx:100805380 768.459