Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7755g00001 ATGGGACGTGTGATCCGTGCGCAGCGTAAGGGTGCGGGCTCAGTCTTCAAGTCCCACACTCACCACCGCAAGGGACCGGCTCGCTTCCGGAGCCTGGACTTCGGGGAGCGGAATGGCTACCTCAAGGGTGTCGTTACCGACGTCATCCACGACCCTGGCCGCGGTGCCCCACTTGCCAAGGTGACTTTCCGCCACCCATTCAGATACAAGAAGCAAAACGAGCTCTTCGTTGCCGCCGAAGGCCTTTATACGGGTCAGTTCATATACTGTGGCAAGAAGGCCACTCTCGTAGTTGGTAATGTTTTGCCCCTTCGCTCTATCCCTGAAGGAGCTGTTATATGCAACGTTGAGCACCATGTCGGTGACCGTGGTGTCTTTGCTAGGGCTTCCGGCGATTATGCCATCGTTATCAGTCACAACCCTGATAATGACACCTCTAGGTTCGTATCCGC 452 0.5597 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRFVSA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7755g00001 151 PANTHER RIBOSOMAL PROTEIN L2 2 147 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vium7755g00001 151 Pfam Ribosomal Proteins L2, C-terminal domain 98 141 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vium7755g00001 151 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vium7755g00001 151 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Vium7755g00001 151 FunFam 60S ribosomal protein L2 1 86 - -
Vium7755g00001 151 SUPERFAMILY Translation proteins SH3-like domain 99 142 IPR008991 -
Vium7755g00001 151 SMART Ribosomal_L2_C_2 96 151 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vium7755g00001 151 Gene3D - 1 86 IPR012340 -
Vium7755g00001 151 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vium7755g00001 151 Gene3D - 90 149 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7755g00001 Vium-Chr7755 2621 3134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7755g00001 1 148 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.568 4.79e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7755g00001 K02938 - gmx:547677 302.753