Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7752g00006 ATGATTCAGGATATGCCTGACTCCACCCGCTCCGCTATGACAAGAAGCTCCTACTCCTTTTACGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGCACGAGGAGGTTCATCAAATAAATCACCCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCGTATCAAAGCAATGCTCAAGATTCCTGTCATTCCAGCCAAAACAAGAATTCCTGCAAGCTTAACGAGGAATTTGAAAACTTATTAAGACCGGCAAAGGACTCTAAGCCCGTTACCCCAGGACATGGTCTCTTACAACAGTGTTCACCTTCATCTCCTCTCAAGAAACAAAGAACTGATTCAACTCAGACACCACCACCACCACCGAACACACGGCACATGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCGATACCTGCAGTCTTTCTCAAATCCAGTACTTGTCATGGAAGCAGTACAACTCAGCAGACAAAACATTATTCATATCCAGCGAGAATGGAGGAGATTGAAGCGCGTAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCTGGGAATTCACAGACACCAAGGTCAACTGCGTTATGACCAAACCTCACCCTCAGAAGCACTTAGAGCGAAGGAAAAAGCTTATAATAATAATAACACTGTCTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCTTCAAACGACCCAAACGTTGGTATCAGGAAAAATGAGGACACCGACGACTCAACATATTTAAGTGATAATGACGAAGAGCCTGAAAATAGGGTAAAGCAAGATGGGGAGGGAAACAGACTCAAGAGAAGCAGAAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGAGTATCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGCCTCACATGAATGGACCACATTTATCACAGTTGGTGGGAGCTGGAATGGGATTCAGGCCACCAGAGCTTCCTGTTCCACCACTATCAGCTATCACAGACTCCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCTCACGCACCTTTCTTCCCCGTCATTGGAAATTCTCCCACACAACCACACTTGGCCGCCACCACCGCACCTACACAACATCTTGCTAAATCTACTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGACCCTCTGGAAAATGCAACAAATCAACTGCAGAATCCAGTGTCCTTTCATCCCCACGGCATCAGTACTCCTTTCATTTTTCCACAAAAGTAG 1578 0.4455 MIQDMPDSTRSAMTRSSYSFYDNDFLELVWENGEVVARGGSSNKSPSIKRTRLNPLYSLEDHLSPLKESDMSSSYQSNAQDSCHSSQNKNSCKLNEEFENLLRPAKDSKPVTPGHGLLQQCSPSSPLKKQRTDSTQTPPPPPNTRHMGFDQTTAKVNFSNFSIPAVFLKSSTCHGSSTTQQTKHYSYPARMEEIEARKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGLGIHRHQGQLRYDQTSPSEALRAKEKAYNNNNTVCKEPFLASSVCSLGASNDPNVGIRKNEDTDDSTYLSDNDEEPENRVKQDGEGNRLKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIEYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLSQLVGAGMGFRPPELPVPPLSAITDSRLHQMFGFPNQIPTMPMPHAPFFPVIGNSPTQPHLAATTAPTQHLAKSTASLQVSLPTNLDPLENATNQLQNPVSFHPHGISTPFIFPQK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7752g00006 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 392 IPR036638 GO:0046983
Vium7752g00006 525 MobiDBLite consensus disorder prediction 292 337 - -
Vium7752g00006 525 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Vium7752g00006 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Vium7752g00006 525 MobiDBLite consensus disorder prediction 67 89 - -
Vium7752g00006 525 FunFam Basic helix-loop-helix transcription factor 323 386 - -
Vium7752g00006 525 MobiDBLite consensus disorder prediction 197 231 - -
Vium7752g00006 525 CDD bHLH_AtPIF_like 328 390 IPR047265 -
Vium7752g00006 525 Gene3D - 324 385 IPR036638 GO:0046983
Vium7752g00006 525 SMART finulus 334 383 IPR011598 GO:0046983
Vium7752g00006 525 MobiDBLite consensus disorder prediction 68 89 - -
Vium7752g00006 525 MobiDBLite consensus disorder prediction 115 134 - -
Vium7752g00006 525 PANTHER TRANSCRIPTION FACTOR PIF3 62 486 IPR044273 GO:0003700|GO:0006355
Vium7752g00006 525 MobiDBLite consensus disorder prediction 285 337 - -
Vium7752g00006 525 MobiDBLite consensus disorder prediction 105 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7752g00006 Vium-Chr7752 28993 31927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7752g00006 283 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 53.279 5.14e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium7752g00006 HLH 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7752g00006 K12126 - gmx:100804665 617.846