Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7752g00002 ATGGGAAGGCATTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAAGAGGATGAAAAACTTCTAAGGCATATCACTAAGCATGGTCATGGTTGTTGGAGCTCGGTTCCTAAGCAAGCAGGTTTGCATAGGTGCGGCAAGAGCTGCAGGCTTCGCTGGATCAATTATCTTAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGATGGTCTCAAATAGCAGCACAATTACCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTTAAGAAGAAACTGAGGCTAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGTTGAGGAGGAGAAAACAACGAGCCAAGAATTATCCAACGAATTGAACCTCTTGAATTCTGAGAGCTTCAAGTCAGACGAAGGGTCCTTTGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCCTGCAGCTCCAAGATTAACACCAAAAACGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTAGTTGTCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACTGACACTCTCCCAACCAATTCAGACTCCAACCATTGGTTCAGTCCAACTGCAAGACCCATTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCAGTCCCCCCAGAAGATATTTCAGCACCTTCGTTCGCTTTGAATGGACCCAATTACTGGGAACCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTCACAAGTAGCAAGAACAGTGTTCTTTCTTCGTGGGGACTGACAGAAGAGGCCAAGTGGTCTGAGTACCTCCATAACCCAATGCTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCCATAATTTCTGGTTCCAAAGAGCAACACCAGTCACAAACTTCTGCCATCTTTTCCAAGGACATCCAAAAGCTAACAGCAGCGTTTGGACATATATAA 1215 0.4477 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKHGHGCWSSVPKQAGLHRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRGINPVTHKPLSEVENVEEEKTTSQELSNELNLLNSESFKSDEGSFEQRASSIAPKAYEMEGSCSSKINTKNDTNLIANCSNKDLFLDSYTTSCQPSDLMGNYPLQMTDTLPTNSDSNHWFSPTARPIDINSEFTSNVMSILPPTTTSFLPSTSFCYKPSLAVPPEDISAPSFALNGPNYWEPSASNNSNGSNTSDGSREFTSSKNSVLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDNTLGSIISGSKEQHQSQTSAIFSKDIQKLTAAFGHI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7752g00002 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium7752g00002 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vium7752g00002 404 MobiDBLite consensus disorder prediction 302 322 - -
Vium7752g00002 404 CDD SANT 17 61 IPR001005 -
Vium7752g00002 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vium7752g00002 404 FunFam MYB transcription factor 68 140 - -
Vium7752g00002 404 FunFam Myb transcription factor 11 67 - -
Vium7752g00002 404 Gene3D - 69 116 - -
Vium7752g00002 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium7752g00002 404 Coils Coil 135 155 - -
Vium7752g00002 404 PANTHER MYB DOMAIN PROTEIN 55 1 325 - -
Vium7752g00002 404 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium7752g00002 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium7752g00002 404 CDD SANT 69 109 IPR001005 -
Vium7752g00002 404 Gene3D - 11 67 - -
Vium7752g00002 404 SMART sant 13 63 IPR001005 -
Vium7752g00002 404 SMART sant 66 114 IPR001005 -
Vium7752g00002 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7752g00002 Vium-Chr7752 4999 6912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7752g00002 1 156 MYB Transcription Factor Family AT4G01680 82.692 2.77e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium7752g00002 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7752g00002 K09422 - gmx:100819449 702.975