Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7739g00002 ATGAAGATTCAGTGCAACGTTTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCTCTGTGTTGGGAGTGTGATGAAAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCACTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACCGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCATCCTCATCGTCTTTGAAGACAGATTCTGGGGAGAAAATTTCTGATACAAAGTCGTCTTCTATCTCTAGAAAGGTTTCCACAGAACCTCAGAACTCAGATTACAATGAATTGTTACCTATCGAAGGTGGAGGAGTTGGGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACCGTTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCCTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCAACAAGGGCTGACAGTGGTAAGTTAGGGGATTCTGATTCTCCGGAGGAAATGAAGGAGGAGGAGGAGTATTTGGAACATGTTCCAGATTCTTCATGGACAGTTCCACAGATCCCTTCACCACCAACAGCTTCTGGGTTACACTGGCCAAAACACCTTCAGTATTCATCTGATAGTCTTCTGTTTGTTCCAGACATAAGCTTTTCTCACATGCAACACTCTCATAAGATCAGCAGTACTTTTTCTAGACGCCGGAGGCACCTTGAATAA 870 0.4483 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKTDSGEKISDTKSSSISRKVSTEPQNSDYNELLPIEGGGVGGFPPAKESFGGGSTVGNISQWTIDEFIGLNEFSQNYDYMEGSTRADSGKLGDSDSPEEMKEEEEYLEHVPDSSWTVPQIPSPPTASGLHWPKHLQYSSDSLLFVPDISFSHMQHSHKISSTFSRRRRHLE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7739g00002 289 Gene3D Classic Zinc Finger 1 92 - -
Vium7739g00002 289 MobiDBLite consensus disorder prediction 201 239 - -
Vium7739g00002 289 CDD Bbox1_BBX-like 5 47 - -
Vium7739g00002 289 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium7739g00002 289 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vium7739g00002 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium7739g00002 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 267 - -
Vium7739g00002 289 MobiDBLite consensus disorder prediction 209 228 - -
Vium7739g00002 289 MobiDBLite consensus disorder prediction 110 151 - -
Vium7739g00002 289 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Vium7739g00002 289 FunFam B-box zinc finger protein 22 1 93 - -
Vium7739g00002 289 MobiDBLite consensus disorder prediction 110 147 - -
Vium7739g00002 289 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vium7739g00002 289 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7739g00002 Vium-Chr7739 10090 13610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7739g00002 1 288 C2C2-CO-like Transcription Factor Family AT1G78600 47.853 1.69e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium7739g00002 zf-B_box 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7739g00002 - - gmx:100790959 488.419