Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7736g00001 ATGAATGTTCTTCTCAGTAAATATGGATCACCCAATAGTAGTCCTGCTCCTTTGATTATGCAGTCGAAGCAGGAGTTGGTTGGCACTGTTGAGGAAGAAAGAAAGGAAGAGGGAATGTTCCTGACATGGGAGGATTTGCAGGTGACAGTTCCAAATGGAAGGAAAGGTAGGAAACCGATTCTTAAGGCTCTAACTGGTTATGCCAAGCCAGGGCAACTTTTGGCAGTAATGGGTCCTTCTGGCTGTGGCAAATCGACACTTCTTGATGCCTTAGCAGGAAGACTGGTTTCGAGCTCAAAGCAAACAGGAAAAATTCTAATTAATGGCCATAAACATGAACTGGCTTATGGAACATCTGCATATGTAACACATGATGATGCTGTGTTATCAACATTAACAGTAGGAGAAGCAGTGTCCTATTCAGCTCATCTCCAATTTCCAGAGTCAATGTCCAACAGAGAGAAGAAAGAGAGAGTAGATTTTACAATCAGACAAATGGGTCTACAAGAGACCACTCACACAAGGATTAAAGGGAAGGCTTCTAAAGGCCTTAGTGAGGGGCAAAAGAGGAGACTTGCCATTTGTATTCAGATTCTTACAAGCCCCAAACTTCTCCTTCTTGATGAACCAACCAGTGGCCTTGACAGTGCAGCTTCCTACTATGTCATGAGCAGAATTGCAAGCCTAAAGATAAGAGATGGCATCAAAAGAACAATCGTTGCATCCGTCCATCAGCCCAGCAGTGAAGTTTTTGAGCTTTTTGATCATCTTTGTCTTCTGTCTTCAGGTGAAACAGTATATTTTGGCACCACTTCTGCTGCAACCGAGTTTTTTGCTTCTAATGGCTTTCCTTGTCCACCTCTCCACAACCCTTCTGATCATTTCTTGAGGATCATAAACAAGGATTTCATACTGGATGATAAAGAAGGCTTCCACATAGTAGTACCCGAAGAAGAAGCAGTGGATACCCTTGTGAAGTTTTTTAAATCTTCTGAAATTAGTAACCAAGTTCGGAAAGAAGTAGCAGCAATAGGTGAAAGGGAATACGGTTTCACGGGGAGCAGCAGAACACAAACAGCATTTCTAACTCAGTGTCACGTTCTTCTACGAAGATCTTCAGTGCACTTGTTTCGTGATGTAACCAATTATTGGTTGCGTCTGGCTATGTTTATTGTAGCAGCTATTAGTATGGGAACTATATTCTTTGACGTTGGTTCAAGTAATTCATCCATTCAGGCTAGAGGGTCACTGGTATCTTTTGTTGCTTCAGTCCTAACTTTCATAACCCTTCTTGGTGGATTTCCTCCATTTTTGGAACAAATTAAGGTATTTGAACGTGAGAGATTGAATGGACACTGTGGTGTTGGTGCTTTTGTCATTAGCCATACATTATCACCTATTCCATACATGGCACTGATGTCAGTGATTCCTGGTGTGATCACTTATTACCTTTCTGGACTTCACACAGGACTTGAACGTTGCATCTATTTTTCTAGTGTATTACTTGCATGCATTTTGTGGGTTGAGAGTCTCATGATGGTTGTTTCAAGTATCCTCCCAAATCCCAACACTAACATCACAGTCTCTGGTGGAATTATGGGAGTGATGATTTTAACTGGTGGGTTTTTTCGTCTGCCAAATGATCTCCCCAAACCATTTTGGAAATACCCTATGTATTATGTTTCCTTCCACAAATATGCCTTCCAAGGATTGTTCAAGAATGAGTTCATTGGTCTGAAGTTGAGAAGTGATGAAGATGGAGGAACCTACATAAGTGACAAGGAAGTACTCACAAAGATATGGCAAGTGGAAATGGGTTACTCCAAATGGGTTGATCTTGCTATCTTAATCGGAATAATTGTTTTATATAGACTTATGTTCTTGACAATTACTAAGACTAAGGAGAAAATGAAAAGCTAATTAATCTTTTGAAACAAACATAGTTATCAAATTTAATACATGATATTTTTACATAATGAGTTGGTTGGCACTGTTGAGGAAGAAAGAAAGGAAGAGGGAATGTTCCTGACATGGGAGGATTTGCAGGTGACAGTTCCAAATGGAAGGAAAGGTAGGAAACCGATTCTTAAGGCTCTAACTGGTTATGCCAAGCCAGGGCAACTTTTGGCAGTAATGGGTCCTTCTGGCTGTGGCAAATCAACACTTCTTGATGCCTTAGCAGGAAGACTGGTTTCGAGCTCAAAGCAAACAGGAAAAATTCTAATTAATGGCCATAAACATGAACTGGCTTATGGAACATCTGCATATGTAACACATGATGATGCTGTGTTATCAACATTAACAGTAGGAGAAGCAGTGTCCTATTCAGCTCATCTCCAATTTCCAGAGTCAATGTCCAACAGAGAGAAGAAAGAGAGAGTAGATTTTACAATCAGACAAATGGGTCTACAAGAGACCACTCACACAAGGATTAAAGGGAAGGCTTCTAAAGGCCTTAGTGAGGGGCAAAAGAGGAGACTTGCCATTTGTATTCAGATTCTTACAAGCCCCAAACTTCTCCTTCTTGATGAACCAACCAGTGGCCTTGACAGTGCAGCTTCCTACTATGTCATGAGCAGAATTGCAAGCCTAAAGATAAGAGATGGCATCAAAAGAACAATCGTTGCATCCGTCCATCAGCCCAGCAGTGAAGTTTTTGAGCTTTTTGATCATCTTTGTCTTCTGTCTTCAGGTGAAACAGTATATTTTGGCACCACTTCTGCTGCAACCGAGTTTTTTGCTTCTAATGGCTTTCCTTGTCCACCTCTCCACAACCCTTCTGATCATTTCTTGAGGATCATAAACAAGGATTTCATACTGGATGATAAAGAAGGCTTCCACATAGTAGTACCCGAAGAAGAAGCAGTGGATACCCTTGTGAAGTTTTTTAAATCTTCTGAAATTAGTAACCAAGTTCGGAAAGAAGTAGCAGCAATAGGTGAAAGGGAATAAGGTTTCACGGGGAGCAGCAGAACACAAACAGCATTTCTAACTCAGTGTCACGTTCTTCTAAGAAGATCTTCAGTGCACTTGTTTCGTGATGTAACCAATTATTGGTTGCGTCTGGCTATGTTTATTGTAGCAGCTATTAGTATGGGAACTATATTCTTTGACGTTGGTTCAAGTAATTCATCCATTCAGGCTAGAGGGTCACTGGTATCTTTTGTTGCTTCAGTCCTAACTTTCATAACCCTTCTTGGTGGATTTCCTCCATTTTTGGAACAAATTAAGGTATTTGAACGTGAGAGATTGAATGGACACTGTGGTGTTGGTGCTTTTGTCATTAGCCATACATTATCACCTATTCCATACATGGCACTGATGTCAGTGATTCCTGGTGTGATCACTTATTACCTTTCTGGACTTCACACAGGACTTGAACGTTGCATCTATTTTTCTAGTGTATTACTTGCATGCATTTTGTGGGTTGAGAGTCTCATGATGGTTGTTTCAAGTATCCTCCCAAATCCCAACACTAACATCACAGTCTCTGGTGGAATTATGGGAGTGATGATTTTAACTGGTGGGTTTTTTCGTCTGCCAAATGATCTCCCCAAACCATTTTGGAAATACCCTATGTATTATGTTTCCTTCCACAAATATGCCTTCCAAGGATTGTTCAAGAATGAGTTCATTGGTCTGAAGTTGAGAAGTGATGAAGATGGAGGAACCTACATAAGTGACAAGGAAGTACTCACAAAGATATGGCAAGTGGAAATGGGTTACTCCAAATGGGTTGATCTTGCTATCTTAATCGGAATAATTGTTTTATATAGACTTATGTTCTTGACAATTACTAAGACTAAGGAGAAAATGAAAAGCTAA 3825 0.4039 MNVLLSKYGSPNSSPAPLIMQSKQELVGTVEEERKEEGMFLTWEDLQVTVPNGRKGRKPILKALTGYAKPGQLLAVMGPSGCGKSTLLDALAGRLVSSSKQTGKILINGHKHELAYGTSAYVTHDDAVLSTLTVGEAVSYSAHLQFPESMSNREKKERVDFTIRQMGLQETTHTRIKGKASKGLSEGQKRRLAICIQILTSPKLLLLDEPTSGLDSAASYYVMSRIASLKIRDGIKRTIVASVHQPSSEVFELFDHLCLLSSGETVYFGTTSAATEFFASNGFPCPPLHNPSDHFLRIINKDFILDDKEGFHIVVPEEEAVDTLVKFFKSSEISNQVRKEVAAIGEREYGFTGSSRTQTAFLTQCHVLLRRSSVHLFRDVTNYWLRLAMFIVAAISMGTIFFDVGSSNSSIQARGSLVSFVASVLTFITLLGGFPPFLEQIKVFERERLNGHCGVGAFVISHTLSPIPYMALMSVIPGVITYYLSGLHTGLERCIYFSSVLLACILWVESLMMVVSSILPNPNTNITVSGGIMGVMILTGGFFRLPNDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLRSDEDGGTYISDKEVLTKIWQVEMGYSKWVDLAILIGIIVLYRLMFLTITKTKEKMKSXLIFXNKHSYQIXYMIFLHNELVGTVEEERKEEGMFLTWEDLQVTVPNGRKGRKPILKALTGYAKPGQLLAVMGPSGCGKSTLLDALAGRLVSSSKQTGKILINGHKHELAYGTSAYVTHDDAVLSTLTVGEAVSYSAHLQFPESMSNREKKERVDFTIRQMGLQETTHTRIKGKASKGLSEGQKRRLAICIQILTSPKLLLLDEPTSGLDSAASYYVMSRIASLKIRDGIKRTIVASVHQPSSEVFELFDHLCLLSSGETVYFGTTSAATEFFASNGFPCPPLHNPSDHFLRIINKDFILDDKEGFHIVVPEEEAVDTLVKFFKSSEISNQVRKEVAAIGEREXGFTGSSRTQTAFLTQCHVLLRRSSVHLFRDVTNYWLRLAMFIVAAISMGTIFFDVGSSNSSIQARGSLVSFVASVLTFITLLGGFPPFLEQIKVFERERLNGHCGVGAFVISHTLSPIPYMALMSVIPGVITYYLSGLHTGLERCIYFSSVLLACILWVESLMMVVSSILPNPNTNITVSGGIMGVMILTGGFFRLPNDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLRSDEDGGTYISDKEVLTKIWQVEMGYSKWVDLAILIGIIVLYRLMFLTITKTKEKMKS 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7736g00001 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 278 IPR027417 -
Vium7736g00001 1274 Pfam ABC-2 type transporter 998 1211 IPR013525 GO:0016020|GO:0140359
Vium7736g00001 1274 Pfam ABC-2 type transporter 363 576 IPR013525 GO:0016020|GO:0140359
Vium7736g00001 1274 FunFam ABC transporter G family member 11 39 327 - -
Vium7736g00001 1274 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Vium7736g00001 1274 Pfam ABC transporter 697 847 IPR003439 GO:0005524
Vium7736g00001 1274 SMART AAA_5 70 264 IPR003593 GO:0016887
Vium7736g00001 1274 SMART AAA_5 705 899 IPR003593 GO:0016887
Vium7736g00001 1274 Gene3D - 663 916 IPR027417 -
Vium7736g00001 1274 Gene3D - 28 281 IPR027417 -
Vium7736g00001 1274 FunFam ABC transporter G family member 11 674 962 - -
Vium7736g00001 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 676 922 IPR003439 GO:0005524
Vium7736g00001 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
Vium7736g00001 1274 Pfam ABC-2 type transporter 244 300 IPR043926 GO:0140359
Vium7736g00001 1274 Pfam ABC-2 type transporter 879 935 IPR043926 GO:0140359
Vium7736g00001 1274 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 32 641 - -
Vium7736g00001 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 913 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7736g00001 Vium-Chr7736 1802 9089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7736g00001 693 905 Calmodulin-binding Proteins AT2G36910 27.876 2.99e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7736g00001 K05681 - gmx:100794527 1456.04