Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7734g00004 ATGGATTCATCACCGGCGACGAGGGAGAGAGAAAACGGTGCACAAGGAAACGAGGTGCAAGAAGATGACTACATGGGTGACCTTTCTCAGTTTCTTCCTTCCGATGCTTTGGACACTCCCAAGATTTCTTCATCCAAAAAGATTTCCATCAAGAAAGATCCTTCGGTCAACCCTTCAAGGAACCGGTTGAAAACTCTAAGCTGGCAAGAGCGACGAAAACTTGATAGAGAAAGGAAGCAACAAGACGAGGATGAGCAAACATTAGCAAAAGTGGAAGCTCCAATACCACAATCCAACATTGGGTTTAAGCTTCTCAAACAGATGGGTTACACTCCAGGTTCTGCCCTTGGCAAGCAGGGCTCAGGCAGGGCCGAACCAGTGGGGATTGAAATTCGGCGGTCACGAGCTGGTGTAGGATTAGAAGATCCCCACAAAGAGAAGAGGAAAAAGGAGGAAATCATGTTGAACAGGAAAAGGAGGAAAGAAGAGGACCTAATGAAAGAATTTGGGTCCAGGCAGAAGTCACAGTGGCAGAGTAAGAGAATTATAATTAATTATAATAAGGCAAAGGCTGCCCTTGACCAATTGGAAAATAGGGAAATTTTGGAGCCAGAAAAGAATGATGATGATTCAGAGGTTGAAGAAGAAGAGGAAGAAATAACAGAAGAGGAATTAAACGATGTTTTGATGAAACTGAGGGATGAATTTAATTATTGCCTCTTCTGTGGATGCAAATACGAATCAAGTGAAGCCCTTTTGGACAACTGCCCTGGAACCAATGAAGATGACCACTAA 795 0.4365 MDSSPATRERENGAQGNEVQEDDYMGDLSQFLPSDALDTPKISSSKKISIKKDPSVNPSRNRLKTLSWQERRKLDRERKQQDEDEQTLAKVEAPIPQSNIGFKLLKQMGYTPGSALGKQGSGRAEPVGIEIRRSRAGVGLEDPHKEKRKKEEIMLNRKRRKEEDLMKEFGSRQKSQWQSKRIIINYNKAKAALDQLENREILEPEKNDDDSEVEEEEEEITEEELNDVLMKLRDEFNYCLFCGCKYESSEALLDNCPGTNEDDH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7734g00004 264 Pfam G-patch domain 97 140 IPR000467 GO:0003676
Vium7734g00004 264 SMART G-patch_5 95 141 IPR000467 GO:0003676
Vium7734g00004 264 MobiDBLite consensus disorder prediction 207 224 - -
Vium7734g00004 264 PANTHER UNCHARACTERIZED 20 264 IPR039249 -
Vium7734g00004 264 MobiDBLite consensus disorder prediction 36 64 - -
Vium7734g00004 264 Coils Coil 148 168 - -
Vium7734g00004 264 Coils Coil 179 199 - -
Vium7734g00004 264 SMART DUF4187_2 210 264 IPR025239 -
Vium7734g00004 264 Coils Coil 206 235 - -
Vium7734g00004 264 Pfam Domain of unknown function (DUF4187) 212 264 IPR025239 -
Vium7734g00004 264 MobiDBLite consensus disorder prediction 65 89 - -
Vium7734g00004 264 MobiDBLite consensus disorder prediction 1 92 - -
Vium7734g00004 264 MobiDBLite consensus disorder prediction 199 225 - -
Vium7734g00004 264 ProSiteProfiles G-patch domain profile. 97 143 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7734g00004 Vium-Chr7734 25894 28411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7734g00004 89 139 C2H2 Transcription Factor Family AT5G26610 45.098 8.12e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7734g00004 - - gmx:100777380 429.483