Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7734g00003 ATGGTTTGCAACTACGTCTGCGTGAATCTCGCATTCGTTGTCTTCTCGGCAGCTTTGATTTCTCGCTGTTTCGGATTTACGGATCCCGCTGATGTCACAGCTCTCCAGGATCTATACAGGGCCTTAAACAACCCTCTAGCGCTGAAAGGATGGAACGGTAATGATCCTTGTGAGGAATCTTGGACGGGAATAGCATGTTCCGGGTCATCAGTTATACACATCCAAATTCAACGACTAAACCTTACCGGGCATCTTGGAAGCTTGCTCAATAATCTACAAAACTTAAAGCAGCTTGATGTCAGTTTTAACAACATACTTGGGGAAATCCCTCAGGGTTTACCTCCAAATGCAACACATATAAATATGGCTTGCAACTATTTCAGCGAAAATATCCCCCATTCGTTGTCAACAATGACAAAATTAGCACACCTGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGGAACGTGTTTACTGGTTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCACCGGTGATCTGCCAAGTTCATTTGGTTCCTTGACAACCCTGGATAGATTATTCCTGCAGAACAACAGATTCACCGGATCAGTCACCTACCTGGCTGAGCTTCCACTCATTGATTTGAACATTCAAGACAATCTGTTTAGCGGCCTTCTTCCACAGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTCCAAACCGTGGACAACTCTCCTCCCTGGGCATTTCCCTTGGACAACGTACCCCTTGAGCACAATACTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAGAACTACGCTCCTATTAGGGTAAGGAAACAAAAGAAGAAACATATCAGTCCCGGAGGAATAGCTTTTGTGGTCGGTACAGGAACTTTATTGGCAACCGGTTTCGCTCTCTTCATTGCGATCCGTTTGAATAAGCTTTATACAAAGAGACTGGAGAACTATGAAAGCGACCACAGTGCATTGCCTTCTTGTCCAATCAGTGCGACCAAAGAAGATTCTACTACGGCAATAGACGAGAGCCTACAAATCCCACCTTATAATGCTGCATCCATTTTGGGTCCAAGGCGATTAACTTCCCAACCCCATAAAAGAACTGGGGAAATATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCAATGGAAGGATAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGACAACCTTCTGGGAGAAGGATCGCTTGGTCCTGTTTATAGAGCTGAATTTCCAAATAACAAGGTTTTAGCTGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTGAGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACAACATCTTCTTGTCTTTGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCATAGTACAGCATACAAACCTTTATCGTGGGGCACACGTCTCCGGATCGCTCTAGGTGTTGGTCAGGCCCTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTACTGGACGAAAACCTCATGCCTTGTGTAACTGACTGTGGCTTGGCTATTCTGAGACCACTGACAAGCAATAAAGCCAAAAACCGGGCTTCCGAGATTGATATTAGAGATACAGGATACAGTTCACCTGACCATGGCCAACCAGGAGTTGGCAGCACGAAGAGCGACATCTTTGCCTTTGGCGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGGGAAGAGCACTATCTGGCAAAGTGGGCTTCATCAAGGCTTCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCGTCTCCCTCTGCCTTCAGGTATTACCGTATTAG 2034 0.444 MVCNYVCVNLAFVVFSAALISRCFGFTDPADVTALQDLYRALNNPLALKGWNGNDPCEESWTGIACSGSSVIHIQIQRLNLTGHLGSLLNNLQNLKQLDVSFNNILGEIPQGLPPNATHINMACNYFSENIPHSLSTMTKLAHLNLSHNFLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLTTLDRLFLQNNRFTGSVTYLAELPLIDLNIQDNLFSGLLPQHFQSIPNLWIGGNKFQTVDNSPPWAFPLDNVPLEHNTSRPPITQANAIENYAPIRVRKQKKKHISPGGIAFVVGTGTLLATGFALFIAIRLNKLYTKRLENYESDHSALPSCPISATKEDSTTAIDESLQIPPYNAASILGPRRLTSQPHKRTGEISRKSFSGRDRFNGRIKVYTVAEVQLVTNSFHEDNLLGEGSLGPVYRAEFPNNKVLAVKNINMAGMSFSEEEKFLDVVSTASRLKHPNIVSLKGYCLEHGQHLLVFEYVRNLTLDDALHSTAYKPLSWGTRLRIALGVGQALDYLHSTFSPPVAHGKLKATNVLLDENLMPCVTDCGLAILRPLTSNKAKNRASEIDIRDTGYSSPDHGQPGVGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIVSLCLQVLPY 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7734g00003 677 ProSiteProfiles Protein kinase domain profile. 413 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7734g00003 677 Gene3D Transferase(Phosphotransferase) domain 1 492 677 - -
Vium7734g00003 677 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vium7734g00003 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 673 IPR046959 -
Vium7734g00003 677 FunFam Leucine-rich repeat receptor-like protein kinase 491 677 - -
Vium7734g00003 677 Gene3D Phosphorylase Kinase; domain 1 375 490 - -
Vium7734g00003 677 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Vium7734g00003 677 SUPERFAMILY Protein kinase-like (PK-like) 393 675 IPR011009 -
Vium7734g00003 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
Vium7734g00003 677 Pfam Protein tyrosine and serine/threonine kinase 416 663 IPR001245 GO:0004672|GO:0006468
Vium7734g00003 677 Gene3D Ribonuclease Inhibitor 28 274 IPR032675 -
Vium7734g00003 677 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 490 - -
Vium7734g00003 677 SUPERFAMILY L domain-like 28 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7734g00003 Vium-Chr7734 11766 22991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7734g00003 10 674 Strubbelig Receptor Gene Family AT5G06820 55.821 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium7734g00003 PK_Tyr_Ser-Thr 5.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7734g00003 - - vum:124845744 1352.81