Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7734g00002 ATGATAACTGTCTTCTGTATGAACATTCAAGACAATCTGTTTAGCGGCCTTCTTCCACAGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTCCAAACCGTGGACAACTCTCCTCCCTGGGCATTTCCCTTGGACAACGTACCCCTTGAGCACAATACTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAGAACTACGCTCCTATTAGGGTAAGGAAACAAAAGAAGAAACATATCAGTCCCGGAGGAATAGCTTTTGTGGTCGGTACAGGAACTTTATTGGCAACCGGTTTCGCTCTCTTCATTGCGATCCGTTTGAATAAGCTTTATACAAAGAGACTGGAGAACTATGAAAGCGACCACAGTGCATTGCCTTCTTGTCCAATCAGTGCGACCAAAGAAGATTCTACTACGGCAATAGACGAGAGCCTACAAATCCCACCTTATAATGCTGCATCCATTTTGGGTCCAAGGCGATTAACTTCCCAACCCCATAAAAGAACTGGGGAAATATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCAATGGAAGGATAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGACAACCTTCTGGGAGAAGGATCGCTTGGTCCTGTTTATAGAGCTGAATTTCCAAATAACAAGGTTTTAGCTGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTGAGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACAACATCTTCTTGTCTTTGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCATAGTACAGCATACAAACCTTTATCGTGGGGCACACGTCTCCGGATCGCTCTAGGTGTTGGTCAGGCCCTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTACTGGACGAAAACCTCATGCCTTGTGTAACTGACTGTGGCTTGGCTATTCTGAGACCACTGACAAGCAATAAAGCCAAAAACCGGGCTTCCGAGATTGATATTAGAGATACAGGATACAGTTCACCTGACCATGGCCAACCAGGAGTTGGCAGCACGAAGAGCGACATCTTTGCCTTTGGCGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGGGAAGAGCACTATCTGGCAAAGTGGGCTTCATCAAGGCTTCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCGTCTCCCTCTGCCTTCAGTGGTTGGAGGTGGTTGTAGAGGATAATGGATTGTCAATTAATCATGACTCTATAGATATACCCGTGAAGCAATTTCGACCTCCAATGTCTGAAATCGTGGACAATCTTGTATCATTTTCTCAAAAGCTTGTTTCAGAGAGTGGTGAAGCAGATGAAACTGAACTTGATCCACTTGACATGTCTTTTCACACAACTATCTCCCGCTTTAACGGTTCACCTGCTCTGAGCTATGTATCCGCCTGA 1641 0.4455 MITVFCMNIQDNLFSGLLPQHFQSIPNLWIGGNKFQTVDNSPPWAFPLDNVPLEHNTSRPPITQANAIENYAPIRVRKQKKKHISPGGIAFVVGTGTLLATGFALFIAIRLNKLYTKRLENYESDHSALPSCPISATKEDSTTAIDESLQIPPYNAASILGPRRLTSQPHKRTGEISRKSFSGRDRFNGRIKVYTVAEVQLVTNSFHEDNLLGEGSLGPVYRAEFPNNKVLAVKNINMAGMSFSEEEKFLDVVSTASRLKHPNIVSLKGYCLEHGQHLLVFEYVRNLTLDDALHSTAYKPLSWGTRLRIALGVGQALDYLHSTFSPPVAHGKLKATNVLLDENLMPCVTDCGLAILRPLTSNKAKNRASEIDIRDTGYSSPDHGQPGVGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIVSLCLQWLEVVVEDNGLSINHDSIDIPVKQFRPPMSEIVDNLVSFSQKLVSESGEADETELDPLDMSFHTTISRFNGSPALSYVSA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7734g00002 546 ProSiteProfiles Protein kinase domain profile. 206 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7734g00002 546 Pfam Protein tyrosine and serine/threonine kinase 209 456 IPR001245 GO:0004672|GO:0006468
Vium7734g00002 546 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 171 283 - -
Vium7734g00002 546 SUPERFAMILY Protein kinase-like (PK-like) 185 466 IPR011009 -
Vium7734g00002 546 Gene3D Phosphorylase Kinase; domain 1 168 283 - -
Vium7734g00002 546 Gene3D Transferase(Phosphotransferase) domain 1 285 522 - -
Vium7734g00002 546 PANTHER OS01G0253100 PROTEIN 172 507 - -
Vium7734g00002 546 FunFam Leucine-rich repeat receptor-like protein kinase 284 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7734g00002 Vium-Chr7734 8519 11715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7734g00002 7 546 Strubbelig Receptor Gene Family AT5G06820 50.276 3.55e-162 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium7734g00002 PK_Tyr_Ser-Thr 3.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7734g00002 - - vun:114191517 988.023