Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium772g00002 ATGTCAAGTACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATACTTATATGGTTTTGTTTGTCTCGCCAGAGGAATGCTTCTAGGACTTCAGAGACAGGTTCCTCTGATCCTTCACAAGTTGGAAGACATGGTGCAATCGAGTTGCCTATACGAGACACTAGACGTTTTGAGATGGAAGAACTATCTCTGGCAACAAAAAGTTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAACGTCGTGGACTCGCCAGTCAGGAATTTGTGGATGAGGTACGTTATCTCTCATCCATTCACCACCGGAATCTCGTCACTCTTTTAGGCTACTGTCAGGAGAACAATCTTCAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCCGTGGTCAACAATCGCAACAGAAGCTAGAATTCAAGCTTAGGCTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTCTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACCGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTCCGCAACTTTCTGGGGAGAGTTGACACTGCAGGCTCCTCTTCTCAAGTGGCAACAGATGAAATATTCCTTGCATCAGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGCGATGTATACAGCTTTGGAGTATTTTTGCTGGAATTGTTAAGTGGGAAAGAAGCAACAGCATCACCATTTCCAGACTCTAATCAGAATCTGGTTGAATGGGTGGTAAGCAATGAAGAGCGTGACATGATGTCTTATGATCGGAGATTGGAGAGTAGTTTTACAGCTGAAGGAATGGAAGATTACATCATGCTCATGATCAGATGCTTAGACCCTTCAAGTGAGAGAAGACCTGCAATGAGCTATGTGAAAACGGAACTTGATAGGATCATAGAGAAGGAAATGAAATTGACAACAATCATGGGAGAAGGAACCCCATATGTGGCTCTTGGAAGCCAGTTATTCAAATCAACAACATGA 1131 0.4315 MSSTLAAIFGGAAGAVALVGIAILIWFCLSRQRNASRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATKSFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLASQEFVDEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGRGQQSQQKLEFKLRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLRNFLGRVDTAGSSSQVATDEIFLASEVREFRRFSEKSDVYSFGVFLLELLSGKEATASPFPDSNQNLVEWVVSNEERDMMSYDRRLESSFTAEGMEDYIMLMIRCLDPSSERRPAMSYVKTELDRIIEKEMKLTTIMGEGTPYVALGSQLFKSTT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium772g00002 376 SUPERFAMILY Protein kinase-like (PK-like) 62 353 IPR011009 -
Vium772g00002 376 FunFam Protein kinase superfamily protein 42 149 - -
Vium772g00002 376 Pfam Protein tyrosine and serine/threonine kinase 81 344 IPR001245 GO:0004672|GO:0006468
Vium772g00002 376 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Vium772g00002 376 Gene3D Transferase(Phosphotransferase) domain 1 150 361 - -
Vium772g00002 376 ProSiteProfiles Protein kinase domain profile. 77 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium772g00002 376 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vium772g00002 376 FunFam Protein kinase superfamily protein 150 361 - -
Vium772g00002 376 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 354 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium772g00002 Vium-Chr772 14805 19215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium772g00002 65 374 Trihelix Transcription Factor Family AT5G38560 38.509 2.98e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vium772g00002 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium772g00002 - - gmx:100305436 652.514