Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7727g00001 ATGACGGGAATCTGCAGAACAGTAAACAGAATGAGACCCTTTTGGTCATTTGGCTCACTCACACCATTCCATGTATGGTATCTGCTCAGTACACTTGAAAAAGCCTTCACAAGGCAAAGATCAAAATCACTGGGTGGTCCAAACATGTACGAAGAAAGTAGTGCTTTGATCCGAATGGGATGGTGGCAGAAGACTGTTTTTCCCAGATGGTTTCAAAATCAGAGGCAGTTATCACATCCCCCAGCTCTGAGAAATGATTTGCCTTGGAGGAGGGGGTGTCATAGAAGGCAGTGGAATTGCCTACCCAAGATTTTGGAATGGGGTGGGGAGTTCACTCAAGATGTGGGGAAAAAGAGAGGGGGGAAAAGGACCAAGCAGGTTTACCCAGTACCCCTAGTGAGGACAAAGGAGAGGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGGAAAGAGATATAGCATCTGTGGTGGGAGATGCTATTAACTATATCAGAGCGAAGAGGACAGTGGACGAGTTAAAACTATTGGTGGAGAAAGAAAAGGCAAGAGAAGCAAAGGGTAGTAGTGATGATGAGCACAAGGTTGAAACTGAGGGCAAGATGGTTCCAACCGACCCAGATGATGGTTCCTACAATGAAAGCTTAAGAAGTTCTTGGATACAAAGGAAATCCAAAGACACAGAGGTTGATGTGCGCATTGTTGACAACGAGGTGACAATCAAGCTTGTTCAGAGGAAGAAGATAGATTGCTTGGTGCATGTCTCACAGGTTCTTGATCAGCTCAACCTCGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTGTTCAATACCAAGATGTGTGACGGTTCTTGTGTTTATGCAAGTGCCATAGCCAACAAGCTCATTCAGGTCATGGACACGAGTTTGGCAGCAGTTTCTTCATGA 963 0.4528 MTGICRTVNRMRPFWSFGSLTPFHVWYLLSTLEKAFTRQRSKSLGGPNMYEESSALIRMGWWQKTVFPRWFQNQRQLSHPPALRNDLPWRRGCHRRQWNCLPKILEWGGEFTQDVGKKRGGKRTKQVYPVPLVRTKERDLSSKFDALKELIPNPSKERDIASVVGDAINYIRAIXRTVDELKLLVEKEKAREAKGSSDDEHKVETEGKMVPIXDPDDGSYNESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKIDCLVHVSQVLDQLNLDLQHVAGGHIGDFCSYLFNTKMCDGSCVYASAIANKLIQVMDTSLAAVSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7727g00001 322 SMART finulus 134 180 IPR011598 GO:0046983
Vium7727g00001 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 186 IPR036638 GO:0046983
Vium7727g00001 322 Coils Coil 176 191 - -
Vium7727g00001 322 PANTHER TRANSCRIPTION FACTOR BHLH91 110 321 IPR045895 GO:0006355|GO:0048658
Vium7727g00001 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 174 IPR011598 GO:0046983
Vium7727g00001 322 Coils Coil 171 174 - -
Vium7727g00001 322 Gene3D - 134 197 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7727g00001 114 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 47.500 4.69e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7727g00001 - - vum:124845726 657.521