Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7724g00012 ATGAGTGGTAATGGAAGGAAGAGGCGCCATTTCAGCAGAATCCATGCATTCTCTTGTGGGAAGGCTTCATTCAAAGGGGAGCATTCACTTATAGGGGGTCCTGGATTCTCAAGGATAGTGTACTGCAACGAGGCAGAACGGGGTGAGGAGAGTTTTGTGAGTTATGGTGACAATTATGTGAGTACTACTAAGTACACAGTGGCTACTTTCCTACCCAAGTCCTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTTTACTTTCTTGTCTGTGCAATTCTGTCTTTTTTCCCGGTTTCTCCTTACTCGGCTGTCAGCAATGTTATTCCTCTTGTTGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCTGTTGAGGATTGGAGGAGGAAGAAGCAGGATATAGATATGAATAATAGAAAGGTTAAAATGCACCATGGAGATGGTGTTTTTGACTATTCTAAATGGAAGGATTTGAAAGTTGGAGACATAGTAAAGGTTGAAAAGGATGAATTTTTCCCTGCTGATTTAATCTTACTTTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTAAAAGTTAAACAAGCACTTGAAGAAACATCAAAGCTGCAAGAAGACTCAAGCTATCAAAATTTCAAGGCTATCATCAAATGCGAAGATCCAAATGCAAATTTGTACTCATTTGTAGGCAATTTGGAGCTTGAAGATCAATTGTATCCTCTAGCACCTCAGCAGCTGCTGCTTAGGGACTCAAAGCTAAGGAACACTGAATTTATCTATGGTGCGGTAATTTTCACAGGCCATGACACAAAGGTTATGCAGAATTCAACAGAACCTCCTTCCAAGAGAAGCACAGTTGAGAAACGGATGGATAAAATCATTTACTTTCTCTTCTTTGTCTTATTTTTAATATCTTTCGTTGGTTCAATTTTCTTCGGGATTGCAACTAGGGAAGACCTTGAAAATGGAGTTATGAAGCGATGGTACCTCAGACCAGATAATACCACAATTTACTTTGATCCAAAGAAAGCACCAGTTGCAGCAATGCTGCATTTCTTGACTGCACTCATGTTGTATAGTTACTTGATTCCAATTTCTTTGTATGTTTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGATTTGCATATGTATTATGAGGAAACTGACAGGCCAGCTCATGCTCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGACACTATACTTTCAGATAAAACAGGAACTTTGACTTGCAACTCTATGGAATTCGTCAAGTGTTCTATTGCTGGGATTGCCTATGGCCAAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAAGCAAAAAGGATTACCATTAGATGAAGAGTTGGCAGAAGATGGCTATGTTCCAAAGACTTCTGAAGTAAAATCTTCCGTTAAAGGTTGCAACTTCATGGATGAGAGGATCACAAATGGAAATTGGATCAGTGAACCTCATGCCGATGTAATCCACAGGTTCCTGCAGTTGTTGGCTGTATGCCATACTGCAATACCTGAAATTGATGAAGAAAATGGAAGAGTTTCATATGAAGCTGAGTCACCTGATGAGGCAGCTTTTGTGGTTGCAGCCCGAGAACTTGGGTTTGAGTTTTATGAAAGGACACAGACAACTATCTCACTGCGTGAGTTCAATCCCAAATCAGGCAAAACAACTGAAAGGTCCTACAAACTTTTGAATATACTAGAGTTTAGTAGCACAAGAAAGCGGATGTCTGTAATTGTAAGAGACGATGAGGGGAAATTGCTACTATTTAGCAAAGGAGCAGACAGTGTCATGTTTGAACGACTTGGAAGGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTGATGAATATGCTGATGCTGGTCTGAGGACCTTGATACTTGCATATCGGGAACTTGGTGAAGAAGAGTACAATACATTCAATAAAGAATTTATGGAGGCCAACAACTTAGTAAGTGCTGATAGAGAGCAAATTGTGGAGGAAGTATCAGAAATGATTGAGAAGGAGTTAATTCTTCTTGGTGCTACTGCGGTCGAAGACAAGCTTCAAAATGGGGTTCCTGAATGCATCGACAAGCTAGCTCAGGCAGGAATTAAGCTATGGGTTCTGACTGGTGATAAAATGGAGACAGCAATCAATGTTGGGTATGCATGTAGTTTGCTCAGACAAGGAATGAAGCAAATTATAATCAGTTCAGACACTCCAGAAATCAAATCATTGGAGAAAGTGGAGGACAAGTCTGCTGCAGCAGCGGCAATCAAGGAAAGTGTTATTCTTCAACTAAAGAAAGGAAAGGAATTACTTTCTGAATATGATGAAAACTCTGAGGCATTAGCTCTTATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTGAAGGACCTTTTTCTTGCACTTGCAGTTGGCTGTGCATCTGTCATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTCGTTACTAGATTGGTTAAGGTTAAAACTTGTAGCACAACTCTAGCAATTGGTGATGGAGCAAATGATGTTGGAATGCTTCAAGAAGCTGACATTGGGATTGGCATAAACGGTGTCGAAGGAATGCAGGCAGTTATGTCTAGCGATATTTCCATTGCCCAATTTCGGTTTCTAGAGCGTTTACTACTTGTGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAACATTGCCTTTGGCTTTACCCTCTTCTTCTATGAGATCTACGCCTCGTTCTCAGGGCAAGCTGCATACAATGATTGGTACCTCTCACTATATAACGTATTCTTCACTTCCCTTCCGGTAATTGCCTTAGGAGTATTTGACCAGGATGTTTCTGCTAGATTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTGCAAAATGTGCTGTTCAGCTGGAAACGGATTCTCGGTTGGGCATTTAATGGAGTATTGAGTGCTACCATAATATTCTTCTTCTGCATCAACGCAATGGAGAATCAAGCATTCCGCAAAGCAGGGGAAGTTGCTGATCTGGAAGTTCTTGGTGCAACCATGTACACTTGTGTGGTGTGGGTGGTGAATTCCCAAATGGCACTATCCATCAGTTATTTCACTTACATTCAGCATTTGTTCATATGGGGTGGCATTATTTTCTGGTACATATTCCTGATAGTGTATGGAACAATGGACCCCACTCTATCAACCACTGCCTATAAGGTGTTGATTGAAGCTTGTGCACCAGCACCATCATACTGGCTCCTCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATACTTCGCCTATGCTTCAATCCAAATGAGGTTCTTCCCCATGTTCCATCAGATGATACTGTGGATTCGAAACGATGGGCAAACGACTGACCCAGAATACGTTCATGTTGTCAGACAGAGATCAATAAAACACACAACAGTTGGCTTCACGGCTCGTTTTGAAGCATCGCAGAGTTCGGGAGCATCAAAGAGTATTCAAGTTTGA 3585 0.4106 MSGNGRKRRHFSRIHAFSCGKASFKGEHSLIGGPGFSRIVYCNEAERGEESFVSYGDNYVSTTKYTVATFLPKSLFEQFRRVANFYFLVCAILSFFPVSPYSAVSNVIPLVVVVAATMGKEAVEDWRRKKQDIDMNNRKVKMHHGDGVFDYSKWKDLKVGDIVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKVKQALEETSKLQEDSSYQNFKAIIKCEDPNANLYSFVGNLELEDQLYPLAPQQLLLRDSKLRNTEFIYGAVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFFVLFLISFVGSIFFGIATREDLENGVMKRWYLRPDNTTIYFDPKKAPVAAMLHFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDLHMYYEETDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIAGIAYGQGVTEVERALAKQKGLPLDEELAEDGYVPKTSEVKSSVKGCNFMDERITNGNWISEPHADVIHRFLQLLAVCHTAIPEIDEENGRVSYEAESPDEAAFVVAARELGFEFYERTQTTISLREFNPKSGKTTERSYKLLNILEFSSTRKRMSVIVRDDEGKLLLFSKGADSVMFERLGRNGREFEEKTKQHIDEYADAGLRTLILAYRELGEEEYNTFNKEFMEANNLVSADREQIVEEVSEMIEKELILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINVGYACSLLRQGMKQIIISSDTPEIKSLEKVEDKSAAAAAIKESVILQLKKGKELLSEYDENSEALALIIDGKSLTYALEDDVKDLFLALAVGCASVICCRSSPKQKALVTRLVKVKTCSTTLAIGDGANDVGMLQEADIGIGINGVEGMQAVMSSDISIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWYLSLYNVFFTSLPVIALGVFDQDVSARLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCINAMENQAFRKAGEVADLEVLGATMYTCVVWVVNSQMALSISYFTYIQHLFIWGGIIFWYIFLIVYGTMDPTLSTTAYKVLIEACAPAPSYWLLTLLVLVASLLPYFAYASIQMRFFPMFHQMILWIRNDGQTTDPEYVHVVRQRSIKHTTVGFTARFEASQSSGASKSIQV 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7724g00012 1194 FunFam Phospholipid-transporting ATPase 116 286 - -
Vium7724g00012 1194 Pfam Cation transport ATPase (P-type) 521 624 - -
Vium7724g00012 1194 FunFam Phospholipid-transporting ATPase 698 902 - -
Vium7724g00012 1194 SFLD p-type atpase 406 913 IPR044492 -
Vium7724g00012 1194 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Vium7724g00012 1194 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1140 IPR023298 -
Vium7724g00012 1194 Gene3D - 470 701 IPR023299 GO:0000166
Vium7724g00012 1194 PRINTS P-type cation-transporting ATPase superfamily signature 748 758 - -
Vium7724g00012 1194 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Vium7724g00012 1194 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vium7724g00012 1194 NCBIfam HAD-IC family P-type ATPase 359 448 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7724g00012 1194 NCBIfam HAD-IC family P-type ATPase 826 945 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7724g00012 1194 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1151 - -
Vium7724g00012 1194 SFLD Haloacid Dehalogenase 406 913 - -
Vium7724g00012 1194 SUPERFAMILY HAD-like 419 917 IPR036412 -
Vium7724g00012 1194 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Vium7724g00012 1194 FunFam Phospholipid-transporting ATPase 540 698 - -
Vium7724g00012 1194 Gene3D - 702 912 IPR023214 -
Vium7724g00012 1194 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium7724g00012 1194 SUPERFAMILY Calcium ATPase, transduction domain A 144 284 IPR008250 -
Vium7724g00012 1194 Gene3D - 110 286 - -
Vium7724g00012 1194 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Vium7724g00012 1194 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vium7724g00012 1194 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 667 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7724g00012 Vium-Chr7724 129429 135751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7724g00012 1 1186 Primary Pumps ATPases AT1G68710 69.098 0.0 1781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7724g00012 K01530 - gmx:100777629 2172.51