Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7724g00002 ATGCTGATGGCGAGTTCAAGAGAAGGTCAACAAGCGAAGCAAGAAGGTGGCGCCATTAATATTGACAAGTTTTCCAAGGCATCCTCCAGTACAAGACAATGGTCAGCGTTTAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTAGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCGGTGCCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGGCTCAACCAACCCAGCAAAGTGATAGATTGGCTGCTTGAAGCAACTAAACTCGACATTGACAAGCTCCCTCCACTTCAATTCCCTCAGGGTTTTGGTCAATTTCATCATCCACAAACCCTACTCCCCTTTCATGATTCAAGTTCCTCTCAGCTTTCTCTCGGACCCTTCGGTGAATCTAGCTCCTCATTTGTAAGGGATGGTGGGGTTCAAAACTCCATGGCAAAGTCAAGGTATTGGGACAGTATAGATTCAATATCAAGATTGAAAGGCAAGGAAGGTGAAAAGGGCAAGTGGGTCAAAACAAACGAGGAAGAAAATCAAGAAGATGATGTTGTTGGAAGCTACAGCAACTTGCATGCATCTACTCAGAGGCTTTTTCCTATGGGTAGTGGTACCACCACTACTCACTCACTTTTACCTGGTTTGTTAAACAATACCATGCCATATAACCCCTACAACGCTGAGCCTTCTGGTTTGTCGTTATCCCAATTTGGAGGCCATGGCTTGTTTTCTTCCCAGCAGGTAGATCCCGGTCCAAGCAGCGCAAATGGTGTTCAATTCCCATCTTCTTTGGCATTACCTTCATCTGCTTCTCAATTTTTCCTTGGTTCATCTTCTGCTACACCACCAATGTTCACTACCTATGCTCCATATCTTACACCCTCACTTGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCAGCTTCTCAAATCTTGCCTCATCCTCTCATTCCATCTCTTCACTCCTTGAATCCACATGTCAGACCCTTCCCAGCAACACCCTTCAGTTCAAAGCTTTTGGAGTCAGATAGCATCCGCAGCCAACATGATAAGGATAGCTCTTCTTGA 1122 0.4492 MLMASSREGQQAKQEGGAINIDKFSKASSSTRQWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLQFPQGFGQFHHPQTLLPFHDSSSSQLSLGPFGESSSSFVRDGGVQNSMAKSRYWDSIDSISRLKGKEGEKGKWVKTNEEENQEDDVVGSYSNLHASTQRLFPMGSGTTTTHSLLPGLLNNTMPYNPYNAEPSGLSLSQFGGHGLFSSQQVDPGPSSANGVQFPSSLALPSSASQFFLGSSSATPPMFTTYAPYLTPSLDNDPRQFNHIQFLNSASQILPHPLIPSLHSLNPHVRPFPATPFSSKLLESDSIRSQHDKDSSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7724g00002 373 MobiDBLite consensus disorder prediction 1 21 - -
Vium7724g00002 373 Pfam TCP family transcription factor 51 173 IPR017887 -
Vium7724g00002 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 281 IPR005333 GO:0003700
Vium7724g00002 373 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7724g00002 Vium-Chr7724 25031 27651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7724g00002 35 373 TCP Transcription Factor Family AT5G60970 40.057 6.21e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium7724g00002 TCP 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7724g00002 - - gmx:100788984 553.903