LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7712g00003	ATGAACAACAATTCACTTAGTGGGCAAATACCACCACAACTTTCCAGCTTAGGAAGCCTTCTTCACCTTCTTCTTGATAACAACAACATTACAGGAGATCTTCCCTCTGAACTCTCTGAGATGCCAAGCTTAAAGATTCTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCACGCTCTTATGCAAACATGTCAAAATTGATAAAACTGAGTCTTAGGAATTGCAACTTGCAAGGACCAATCCCTGATTTGAGCACGATACCACGCCTTACGTATCTTGACCTCAGTTTGAACCAGCTGAATGAATCAATTCCAACTAATAAGCTTTCAGACAATATCACAACCCTTGATTTATCAAGCAATAATCTTATTGGAGCTATTCCATCCTACTTTTCTGATCTTCCACGTCTTCAAAAGCTGTCAATTGCAAACAATTCATTGAACGGAAGTGTTCCTTCTACCATTTGGCAGGACAGGACTTTAAATGGATCAGAAATGCTTCACTTGGACATGCAGAATAATCAACTTACAAGCATATCAGGCAGTACAGATCTTCCTCCAAACGTCACCCTCTGGCTTGAGGGAAATCCTATGTGCTCAAATAATAACACCTTAGCTCAGTTCTGCGGATCTAAAACTGACAGTAGCGTCAACGGTAACTTCAGTGTTAGCTGTCCCACCCAAGCATGCCCCCCTCCCTATGAATATACCGTGGACTGTTTCTGTGCTGCCCCCTTGGTTGTTAACTATCGATTAAAAAGTCCTGGATTTTCAGATTTCCGCACTTACATGAATGCATTTCAGAGCATGATGTCAAGGGGTCTTAAAATACGTATTGATCAGTTCTATATTCAAAAATTTGAATGGGAAGAAGGTCCTCGTTTGGGAATGCACTTGAAGCTTTTTCCTTTGTATGTTGATAATAACAGCTCTCATGTTTTCAATACAACTGAGGTTCTTCGGCTCAGAAACTCTTTCTTAGACTTTGATCTTCCAACCAATGATTTGTTCGGACCTTTTGAGCTTCTAGACTTCATTCTGCTGGATCCTTACAGGGATGTGATTGTTACCTCTCCAAGTTCAGGGATCAGCAAAGGAGCACTGGCTGGAATAGTCTTGGGTGCAATTGCCTTTGCAGTTACTTTTTCTGCAATTGTTACTATGCTCGTACTGAGAATACGTTTGAGAGATCATTCTGCACCCTCCAAACGGACAAAAGCATCTAGGATCCCAATAAAAATTGAAGGTCTAAGATCATTTAACTACGAAGACATGGCTGGCGCTACGAACAATTTTAGTGACTCAGCTCGAATTGGACAAGGTGGGTATGGGAGGGTTTTCAAAGGTCTTCTTCCTGATGGCACTGTTGTTGCCATAAAGCGTGCACAGGAGGGTTCCCTGCAGGGTGAGAAGGAGTTTCTTACAGAAATAGAATTGCTATCAAGGCTACATCACCGCAACCTTGTCTCTCTCATTGGATACTGCGATGAAAAGGGTGAACAGATTTTGGTTTATGAGTACATGCCAAACGGAACGCTAAAGGATCACCTCTCTATTTATTCGGAAAAACCTCTTAGTTTTTCCATGAGGTTGAAGATTGCTCTAGGATCAGCTAAAGGTCTTCTGTATCTACACACGGAAGTAGATCCTCCAATATTCCACCGAGATGTCAAGGCCACCAATATATTATTGGACTCCAAGTTCACTGCAAAAGTTGCTGACTTTGGACTTTCACGACTTGCCCCAGTCCAAGATACAGAAGGAAACGTGCCTGGTCATGTATCTACTGTGGTAATGGGGACTCCGGGTTATATTGATCCAGAGTACTACTTAACTCACAAATTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTAGAACTTCTGACTGGGAGGCCACCAATCTTTCACGGCGAAAATCTTATTAGACAGGTTATCATGGCATACGAATCTGGTGGATTGTTTTCAGTTATTGATAAACGTATTGGGTCTTATCCTTCAGAATACGTGGAGAAGTTTTTGACGTTGGCCTTAAAGTGTTGCAAAGATGCACCAGACGAGCGACCTAAAATGGCAGCAGTGGCTAGAGAGATCGAAAACATCTGTTCAATGTTACCGGAGACGAACGATGTGGAAGCAGAGCATGGGAGAAGTGGTTATGGAAGAATAATATCCAGTTCACAACCTTCATCATCTACTAGCAGGACTACCTTTGTTTCAGAAGATGTGTCTGGTAGTGACCTTGTCAGTGGAAAGATACCCACCATTAGGCCTAGATAA	2295	0.4187	MNNNSLSGQIPPQLSSLGSLLHLLLDNNNITGDLPSELSEMPSLKILQLDNNNFGGNSIPRSYANMSKLIKLSLRNCNLQGPIPDLSTIPRLTYLDLSLNQLNESIPTNKLSDNITTLDLSSNNLIGAIPSYFSDLPRLQKLSIANNSLNGSVPSTIWQDRTLNGSEMLHLDMQNNQLTSISGSTDLPPNVTLWLEGNPMCSNNNTLAQFCGSKTDSSVNGNFSVSCPTQACPPPYEYTVDCFCAAPLVVNYRLKSPGFSDFRTYMNAFQSMMSRGLKIRIDQFYIQKFEWEEGPRLGMHLKLFPLYVDNNSSHVFNTTEVLRLRNSFLDFDLPTNDLFGPFELLDFILLDPYRDVIVTSPSSGISKGALAGIVLGAIAFAVTFSAIVTMLVLRIRLRDHSAPSKRTKASRIPIKIEGLRSFNYEDMAGATNNFSDSARIGQGGYGRVFKGLLPDGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLIGYCDEKGEQILVYEYMPNGTLKDHLSIYSEKPLSFSMRLKIALGSAKGLLYLHTEVDPPIFHRDVKATNILLDSKFTAKVADFGLSRLAPVQDTEGNVPGHVSTVVMGTPGYIDPEYYLTHKLTDKSDVYSLGVVFLELLTGRPPIFHGENLIRQVIMAYESGGLFSVIDKRIGSYPSEYVEKFLTLALKCCKDAPDERPKMAAVAREIENICSMLPETNDVEAEHGRSGYGRIISSSQPSSSTSRTTFVSEDVSGSDLVSGKIPTIRPR	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7712g00003	764	Pfam	Leucine rich repeat	114	158	IPR001611	GO:0005515
	Vium7712g00003	764	Gene3D	Phosphorylase Kinase; domain 1	405	509	-	-
	Vium7712g00003	764	Gene3D	Ribonuclease Inhibitor	1	210	IPR032675	-
	Vium7712g00003	764	SUPERFAMILY	Protein kinase-like (PK-like)	419	717	IPR011009	-
	Vium7712g00003	764	Pfam	Protein kinase domain	435	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7712g00003	764	PANTHER	RECEPTOR-LIKE PROTEIN 55	1	706	-	-
	Vium7712g00003	764	FunFam	Leucine-rich repeat protein kinase family protein	398	509	-	-
	Vium7712g00003	764	CDD	STKc_IRAK	440	706	-	-
	Vium7712g00003	764	MobiDBLite	consensus disorder prediction	726	749	-	-
	Vium7712g00003	764	MobiDBLite	consensus disorder prediction	725	764	-	-
	Vium7712g00003	764	SUPERFAMILY	L domain-like	2	211	-	-
	Vium7712g00003	764	ProSiteProfiles	Leucine-rich repeat profile.	167	188	IPR001611	GO:0005515
	Vium7712g00003	764	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	554	566	IPR008271	GO:0004672\|GO:0006468
	Vium7712g00003	764	Gene3D	Transferase(Phosphotransferase) domain 1	510	722	-	-
	Vium7712g00003	764	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	510	719	-	-
	Vium7712g00003	764	ProSitePatterns	Protein kinases ATP-binding region signature.	440	462	IPR017441	GO:0005524
	Vium7712g00003	764	ProSiteProfiles	Protein kinase domain profile.	434	706	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7712g00003	764	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	110	236	-	-
	Vium7712g00003	764	SMART	serkin_6	434	706	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7712g00003	Vium-Chr7712	26170	34096	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7712g00003	1	712	Receptor kinase-like Gene Family	AT5G01950	53.103	0.0	729

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Vium7712g00003		Pkinase	1.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7712g00003	-		-	gmx:100785752	1223.38