Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7712g00001 ATGGCGGATTTTTTTATTTCCATCGCAGCAAAGATTGCAGAATATGCGGTGGATCCAATTTTACATCATACTCAATACTTGTGTGGTTTCAACGACTTTGCTCCCAATCTTTCAAATGCCAAAATACGATTGGAATTGACTCGAGATGGAGTGAAGGAGCGAATTAGAAAAGCCATCAATATGGTTGAAAAAGTTGAGCCTACTGTTGAGAACTGGCTGAAAGATGTTGAAAAAGTCTTAGAAGAAGTGCAAATGCTGGAAGAAAGAATATTGAGCGTGAACAAAAGCTATTTCCGAAAGCAATGTCAATATTCTCTTACAAAACAAATAAAAAGAAAAACAACTGAAATGATTCAGCTCCTTCATAATAGAAAGTTTGAACTGTTTTGGAGGATTACTGAACTTCCAGGAACGAAATACTATTCTTCCAATAATTTCTTTATGTTCAACTCTACAGAAGAATCTTACAAGAAGCTTCTAGAAGCATTAAAGAATAAAAGTGCTTTCATAATTGGATTAGTTGGATTAGGAGGGTCAGGGAAAACTACTTTGGCAAAAGAAGTGGGTAAAAAAGTTGAAGAGATGAAACTCTTTGAGAAGGCTGTCTTGGCAACAGTGTCGCAACCTCTAAATATAATAAGTATCCAAGATCAGATTGCTGATCAATTGAGCGTTGAGTTAAAGGAAGCATCGGAAATAAGTAGAGCACAGAGACTATCAGAAAGATTAAGGAAAGGTACAACTCTTGTAATCTTGGATGATGTATGGGAAAAGCTAAACTTTGAAGCTTTAGGTATTCCATTTGATGAAAACAGTAAAGCTTGTTGCATATTCCTAACAACTGGGAGTAGAGAAGTATGCACTTCTATGAAATGTCAAAATATAATTGAACTTAATCCCTTGACTGACGGGGAAGCTTGGACTTTGTTCACCTTCCATGCAAACATAAGTAATGACTCCCCAGAAGCTTTGAAAGTTATGGCAGAAAGAATCGTTACTAAATGTAACGGATCGTCTACTGCAATTGCAACGTTAGGAAGCACGCTAAAAGAGAAAACCATTGAAGAGTTTGAGTCAGCATGGTTAAGACTGCAAAATTCCGAACGACTTAGTTCTCTAAAAGGCTTAACAAGTCATCAAGTTTGTCTTAAAGTAAGTTATGATAATTTGACAAACCAATTAGCCAAATCCTTATTATTGTTGTGTTCAATATTTCCAAAGAATCATGAAATTGATTTGGAAGATTTATTTCGATTTGGAAGAGGATTGGGCGTAATTTGGAGATTTGGAAGAATTGAGAAAGAAAGGAGGGTGATGCGTGCAGCTATTAACATCCTTAAGAATTCTTATATGTTGGCATATGTCAAAGAAAAAGAAAAGGTGAAAATGCGTGACTCGATTCGTGATGTAGCCTTATGGATTGCAGCTGAAAGTGGTCAAGCAATTTTGACATGTACTGCAGTGGATCCGAGAGTGTTGGTAGATGATGAAATCACGAAAGATAAGAATGTAATAGCCTTATGGGATATGAAAAATGGTGAACTTCTCAACTATGAATGGAATTGTCCATCACTTGAAATTCTCTTGCTTCATTCTCCACAGGTTGGCTTTACAATATCAAATGCTTTTATTGAAAGGTTGAAAAAGCTTAAACTACTGGCATTCTTAAAATTTGAATATAGGTGGAAGTTGCCTTTGGAGACAGAAACTCCATCATGGTACGCTTCACCACTATCGCAATCAATTGAGTCATTAAAAAATCTCAATACTCTTAGCTTGAGAGGTTATAAATTAGGTGACATCTCAGTTTTGGAAAGTCTAGAAGCACTTGAGATTCTTGACTTGCGTGGCTCTTCTTTCAAAGAATTGCCTAATGGAGTAGTAGCATTACAGAAATTGAAACTCCTAGATTTGTACGGTTGTTTGATTGAGAAAAATAATGCTTATGAAGTTATAGGAAGATGTTTGAGGCTAGAGGAATTGTATTTGTATTTGTTTCCATCAAAAGAGGAGTTTCCACATGATGTCTCTTTCTCGAGATTGCAGAGGTATGTTATAATACAATATCACTCTGAATCATTTTCATATTACATACATGCTGACATTTTGGAAAAACATAGACCATCTAGAGCTCTGTGCATAGAAGGTTTCAATGCCTCTACTCAAACTTTCATATCATTACCAATTAAGGATCTCTTTATGAGGGCAGTGTACCTTCATTTGAAGTACATTGAGGGAGGTTACAAAAATGTAATCCCATCCATGCGTTCACAAGGCATGAATCAGATTGTTGCCCTAATCCTTGAACACTGTCTTGATATTGAATTCCTCTTTGATGGAACTTTTACAAACAACAATGTTGATGTGCTTCATACCAAAACTGTATTTTCCAACCTATGTACCGTAAGGTTGCATCAGATGCATGGCCTTCGAGAAGTGTTTCATGACCCTTCTTCACAATGCTCTTTAGAAAAATTAGAAGAGTTGAGCATTGATAGTTGTAACCAATTATACAACATATCCTTCCCAAGGAACTCAAATCTATGCAGTCTAAAGGAGTTAAGAATAATAAGTTGCCCAGTGCTAACTTGTCTCTTCATGCCATTCATTGTCCAAACTCTGAAGCTGCTGGAGGTTCTGCAAATATATGAATGCAGTGAATTGATGCACATAATTCCAGCAGAAGGGAATGATTATGTTGGTACTCAAGATCATACATCTTTGATGCTCCCAAAATTAAGGATTATTGAGATTGCAGGATGTGACAAGTTGAAATATATATTCCCTGTGTGTTTTGGAAGGCTACCAAGTTTGGAAAGGCTGATCACTAAAAATTGTGACAAGTTGAAGTATGTATTTGGCACTGAAAAGGAACGCCATCTTTCAATGTACCATGAATATCCAGATTTGCTTAATTTGGAAGTTCTCTTGTTAGTTTCCTTACCTAACCTGGTTGACATTTGGCCTTCTTATTGTCATCCACGTTTACCAAATTTGAAAGAGTTACAATGCACTGAATGTTCAACATTGTCTAACTCTTCTTTGAGGAAGATGGCGATTGATTCAGGTTTATACCACCAAGGCGCAGCTGCAATGAAGAAACTGCTAGATGAAGCTGCCCTCAAATTCACAAAGCTTATATTTTCTCATCTTGGAGTAAAATGCCTTTTTCAATTCCAAATAGGAGAACCTGGGACCAATAGAGAACTACCCTTAAGGTTATCTACTCTGGACTTGCTGGCTCTACCACAACTCAAATTCATATGGAAAAGCCCCACAAATTTTCTAAGCCTCCAACTGCTTCAATTTTTACATGTGGATAGATGTCCAAAATTGAAATCCATCTTCTCCTCTGCCATTATTAGAAGCTTACCAGTGTTGAGAAAACTAGAAATACTCAATTGTGAGGAACTGGAGCAAATATTTGATTCAGAATGTTATCAAATAGAGAAGTGTTTTTCTTTCGAATGTGAAGCTGATATGGATGATAAAGTGGGGAGGGACAAAGATAGCGAACAAGTTCTGCTACAAAACCTGAGAAATATAACACTCACAAGTTTGCCAAACTTCAAAGAGATTCACCGTGGATTTCAGTTAAAAGATCATGTTGAACAGATCATAGAGGATTGCCCAGAATACTCTCGAATTATGGAATAA 3657 0.3653 MADFFISIAAKIAEYAVDPILHHTQYLCGFNDFAPNLSNAKIRLELTRDGVKERIRKAINMVEKVEPTVENWLKDVEKVLEEVQMLEERILSVNKSYFRKQCQYSLTKQIKRKTTEMIQLLHNRKFELFWRITELPGTKYYSSNNFFMFNSTEESYKKLLEALKNKSAFIIGLVGLGGSGKTTLAKEVGKKVEEMKLFEKAVLATVSQPLNIISIQDQIADQLSVELKEASEISRAQRLSERLRKGTTLVILDDVWEKLNFEALGIPFDENSKACCIFLTTGSREVCTSMKCQNIIELNPLTDGEAWTLFTFHANISNDSPEALKVMAERIVTKCNGSSTAIATLGSTLKEKTIEEFESAWLRLQNSERLSSLKGLTSHQVCLKVSYDNLTNQLAKSLLLLCSIFPKNHEIDLEDLFRFGRGLGVIWRFGRIEKERRVMRAAINILKNSYMLAYVKEKEKVKMRDSIRDVALWIAAESGQAILTCTAVDPRVLVDDEITKDKNVIALWDMKNGELLNYEWNCPSLEILLLHSPQVGFTISNAFIERLKKLKLLAFLKFEYRWKLPLETETPSWYASPLSQSIESLKNLNTLSLRGYKLGDISVLESLEALEILDLRGSSFKELPNGVVALQKLKLLDLYGCLIEKNNAYEVIGRCLRLEELYLYLFPSKEEFPHDVSFSRLQRYVIIQYHSESFSYYIHADILEKHRPSRALCIEGFNASTQTFISLPIKDLFMRAVYLHLKYIEGGYKNVIPSMRSQGMNQIVALILEHCLDIEFLFDGTFTNNNVDVLHTKTVFSNLCTVRLHQMHGLREVFHDPSSQCSLEKLEELSIDSCNQLYNISFPRNSNLCSLKELRIISCPVLTCLFMPFIVQTLKLLEVLQIYECSELMHIIPAEGNDYVGTQDHTSLMLPKLRIIEIAGCDKLKYIFPVCFGRLPSLERLITKNCDKLKYVFGTEKERHLSMYHEYPDLLNLEVLLLVSLPNLVDIWPSYCHPRLPNLKELQCTECSTLSNSSLRKMAIDSGLYHQGAAAMKKLLDEAALKFTKLIFSHLGVKCLFQFQIGEPGTNRELPLRLSTLDLLALPQLKFIWKSPTNFLSLQLLQFLHVDRCPKLKSIFSSAIIRSLPVLRKLEILNCEELEQIFDSECYQIEKCFSFECEADMDDKVGRDKDSEQVLLQNLRNITLTSLPNFKEIHRGFQLKDHVEQIIEDCPEYSRIME 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7712g00001 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 401 IPR027417 -
Vium7712g00001 1218 Gene3D - 301 391 IPR042197 -
Vium7712g00001 1218 Gene3D Ribonuclease Inhibitor 1042 1217 IPR032675 -
Vium7712g00001 1218 Gene3D Ribonuclease Inhibitor 737 894 IPR032675 -
Vium7712g00001 1218 Gene3D Ribonuclease Inhibitor 480 698 IPR032675 -
Vium7712g00001 1218 Gene3D Ribonuclease Inhibitor 908 1024 IPR032675 -
Vium7712g00001 1218 FunFam Probable disease resistance protein At1g61300 142 294 - -
Vium7712g00001 1218 PRINTS Disease resistance protein signature 242 256 - -
Vium7712g00001 1218 PRINTS Disease resistance protein signature 605 621 - -
Vium7712g00001 1218 PRINTS Disease resistance protein signature 335 349 - -
Vium7712g00001 1218 PRINTS Disease resistance protein signature 170 185 - -
Vium7712g00001 1218 Pfam NB-ARC domain 156 389 IPR002182 GO:0043531
Vium7712g00001 1218 Gene3D - 137 297 IPR027417 -
Vium7712g00001 1218 Coils Coil 69 96 - -
Vium7712g00001 1218 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1073 1216 - -
Vium7712g00001 1218 SUPERFAMILY L domain-like 463 1146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7712g00001 Vium-Chr7712 6641 11396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7712g00001 156 474 WRKY Transcription Factor Family AT5G45050 25.000 2.20e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7712g00001 - - gmx:102662074 1340.1