Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7707g00001 ATGCAATTTATGGAAGCTATTGCTCCAGCTGAATACAAGGTGTCAGAAAAGACGAGAGAAGCTGGTTTTGGCATTGAACCAGATGATATTGCCTCACTGGTTCGAGGCCATGATTACAAGAGCTATAAAAGAATCGGTCAAGTTGAAGCAATTATAGAGAAACTTGGTGCCTCGGTTGATGACGGTGTTGGTAGCGGCAGTATAGATACCAGGCAGGAGATTTATGGAGTCAACCGTTATACTGAGAAACCTTCTAAAAGCTTCCTGATGTTTGTTTGGGAAGCACTGCATGACTTAACACTAATCATTCTCATGGTCTGTGCGCTAGTTTCTATAGCCATTGGGCTTCCCACCGAAGGATGGCCAAAAGGTGTTTATGATGGTCTGGGAATCATACTTAGTATCTTCTTGGTAGTCAATGTTACTGCTATCAGTGACTATCAGCAATCCCTGCAGTTCAGGGATTTGGACAAGGAAAAGAAAAAGATCTTTGTTCAGGTTACAAGGGACAGAAAACGACAGAAGGTCTCAATTTATGATTTGGTTGTGGGAGATATTGTTCATTTGTCAACTGGTGATCAAGTTCCTGCTGATGGCATTTATATATCAGGATATTCTTTGGTAATTGATGAGTCAAGTTTGACAGGTGAGAGCGAACCAGTAAATATAGATGAAAAAAGACCTTTTCTTCTTTCGGGAACCAAAGTTCAAGATGGTCAGGGGAAGATGATAGTTACGACTGTCGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTCTAAGTGAGGGTGGAGAGGATGAGACTCCACTACAGGTGAAATTAAATGGAGTTGCTACAGTTATTGGTAAAATTGGTTTGACTTTTTCTGTGCTGACATTTCTGGTGTTGACAATAAGGTTTGTGGTGGAAAAAGCAATTACTGGTGATTTTTTCAGTTGGTCTTCAAATGATGCATTGAAGCTGCTGGACTACTTTGCTATTGCGGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTGCCATTAGCTGTAACACTTAGTCTTGCTTTTGCAATGAAAAAGTTGATGAAGGATAAGGCACTTGTGAGACATCTTTCTGCTTGTGAAACTATGGGTTCGGCAACTTGCATCTGCACAGATAAAACAGGAACATTGACCACTAACCACATGGTGGTTAATAAACTTTGGATATGTGGAAGGAGCACGGAGATTAAAGGCTATGAGAGCGTTGACAAACTAAAGACAGAGGTACCTGAAGAAGTTTTAAGCATCCTTTTGCGAGCTATATTTCAAAATACTTCTTCTGAAGTAGTTAAGGACAAAGATGGAAATTCAACAACATTGGGCACACCAACAGAATCGGCATTATTGGAATTTGGCTTGCTTTCAGGTGGCGATTTTGATGCGCAGCGTGCAACATATAAGATACTTAAGGTTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTAGTAGGTCTTCCTGATGGAGGTGTTCAAGCTTTCTGCAAAGGTGCTTCAGAAATAGTATTAAAATTGTGTAACAAAGTTATTGATCCTAGTGGAATAGTTGTTGATCTTTCTGATGAGCAGGCAAAGAACGTCTCTGACATTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTAGCTGTCAAAGATGTAAATGAATCCTCAGGGGAAACCAGCATCCCTGAAGATGGCTATACTCTGATAGCCATTGTGGGAATTAAGGATCCTGTGCGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGCTTAGCTGCTGGAATAACTGTCCGCATGGTTACCGGTGATAACATAAATACAGCGAAAGCTATAGCTAAAGAATGTGGTATACTTACGTGGGATGGTGTAGCTATAGAAGGACCCCAATTTCGTGACTTGTCACCAGAGCAAATGGAGAGTATTATACCAAGAATTCAGGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTAGTAACCCGTTTGAGGAATATGTTTCGTGAGGTTGTAGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGTCGGACATTGGGCTTGCTATGGGCATAGCTGGAACTGAGGTTGCCAAAGAAAATGCGGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAGATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGTATCACAGGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTGGGCGCATTGGCTTTGGCCACTGAACCTCCGAATGATGGACTTATGCTAAGACCCCCTGTTGGAAGGACAACAAGTTTTATTACCAAATCCATGTGGAGAAATATTTTTGGTCAAAGTATATATCAACTAATTGTTCTTGCGGTTCTCACTTTTGACGGGAAGAGACTACTGAGAATTGATGGTCCAGATTCAACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTTTTCAATGAGATAAACAGCCGAGATATTGAAAAGATAAACATATTCAAGGGGATTTTTGAGAGCTGGATATTTTTTACGGTTATTTTGTCGACAGTGGTATTTCAGGTAGTGATAGTTGAGTTCCTGGGAACACTTGCCAGCACAGTGCCTTTAAGCTGGGAATTCTGGGTACTCAGCGTGGTAATTGGAGCAATTAGCTTACCCATAGCTGCTATACTTAAGTGCATCCCAGTTGACAAAAGAGAAGCCACATACCACCATGATGGTTATGAGCCACTGTCTGGTCCCGAGCTCACATTTACACTTCTTCAACAAACACATTTTCGTGAAAGTATAATATCAACATGTCAAGAATGTGGTATACTTACGTGGGATGGTGTAGCTATAGAAGGACCCCAATTTCGTGACTTGTCACCAGAGCAAATGGAGAGTATTATACCAAGAATTCAGGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTAGTAACCCGTTTGAGGAATATGTTTCGTGAGGTTGTAGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGTCGGACATTGGGCTTGCTATGGGCATAGCTGGAACTGAGGTTGCCAAAGAAAATGCGGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAGATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGTATCACAGGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTGGGCGCATTGGCTTTGGCCACTGAACCTCCGAATGATGGACTTATGCTAAGACCCCCTGTTGGAAGGACAACAAGTTTTATTACCAAATCCATGTGGAGAAATATTTTTGGTCAAAGTATATATCAACTAATTGTTCTTGCGGTTCTCACTTTTGACGGGAAGAGACTACTGAGAATTGATGGTCCAGATTCAACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTTTTCAATGAGATAAACAGCCGAGATATTGAAAAGATAAACATATTCAAGGGGATTTTTGAGAGCTGGATATTTTTTACGGTTATTTTGTCGACAGTGGTATTTCAGGTAGTGATAGTTGAGTTCCTGGGAACACTTGCCAGCACAGTGCCTTTAAGCTGGGAATTCTGGGTACTCAGCGTGGTAATTGGAGCAATTAGCTTACCCATAGCTGCTATACTTAAGTGCATCCCAGTTGACAAAAGAGAAGCCACATACCACCATGATGGTTATGAGCCACTGTCTGGTCCCGAGCTCACATAA 3972 0.4147 MQFMEAIAPAEYKVSEKTREAGFGIEPDDIASLVRGHDYKSYKRIGQVEAIIEKLGASVDDGVGSGSIDTRQEIYGVNRYTEKPSKSFLMFVWEALHDLTLIILMVCALVSIAIGLPTEGWPKGVYDGLGIILSIFLVVNVTAISDYQQSLQFRDLDKEKKKIFVQVTRDRKRQKVSIYDLVVGDIVHLSTGDQVPADGIYISGYSLVIDESSLTGESEPVNIDEKRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFSVLTFLVLTIRFVVEKAITGDFFSWSSNDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVNKLWICGRSTEIKGYESVDKLKTEVPEEVLSILLRAIFQNTSSEVVKDKDGNSTTLGTPTESALLEFGLLSGGDFDAQRATYKILKVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKLCNKVIDPSGIVVDLSDEQAKNVSDIINGFASEALRTLCLAVKDVNESSGETSIPEDGYTLIAIVGIKDPVRPGVKEAVQTCLAAGITVRMVTGDNINTAKAIAKECGILTWDGVAIEGPQFRDLSPEQMESIIPRIQVMARSLPLDKHTLVTRLRNMFREVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVARWGRAIYINIQKFVQFQLTVNIVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMLRPPVGRTTSFITKSMWRNIFGQSIYQLIVLAVLTFDGKRLLRIDGPDSTIVLNTLIFNSFVFCQVFNEINSRDIEKINIFKGIFESWIFFTVILSTVVFQVVIVEFLGTLASTVPLSWEFWVLSVVIGAISLPIAAILKCIPVDKREATYHHDGYEPLSGPELTFTLLQQTHFRESIISTCQECGILTWDGVAIEGPQFRDLSPEQMESIIPRIQVMARSLPLDKHTLVTRLRNMFREVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVARWGRAIYINIQKFVQFQLTVNIVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMLRPPVGRTTSFITKSMWRNIFGQSIYQLIVLAVLTFDGKRLLRIDGPDSTIVLNTLIFNSFVFCQVFNEINSRDIEKINIFKGIFESWIFFTVILSTVVFQVVIVEFLGTLASTVPLSWEFWVLSVVIGAISLPIAAILKCIPVDKREATYHHDGYEPLSGPELT 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7707g00001 1323 Gene3D - 582 697 IPR023214 -
Vium7707g00001 1323 Pfam Cation transport ATPase (P-type) 435 519 - -
Vium7707g00001 1323 PRINTS P-type cation-transporting ATPase superfamily signature 577 588 - -
Vium7707g00001 1323 PRINTS P-type cation-transporting ATPase superfamily signature 599 609 - -
Vium7707g00001 1323 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Vium7707g00001 1323 PRINTS P-type cation-transporting ATPase superfamily signature 210 224 - -
Vium7707g00001 1323 PRINTS P-type cation-transporting ATPase superfamily signature 704 716 - -
Vium7707g00001 1323 PRINTS P-type cation-transporting ATPase superfamily signature 680 699 - -
Vium7707g00001 1323 Pfam E1-E2 ATPase 164 358 - -
Vium7707g00001 1323 NCBIfam calcium-translocating P-type ATPase, PMCA-type 39 941 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium7707g00001 1323 NCBIfam HAD-IC family P-type ATPase 1006 1129 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7707g00001 1323 NCBIfam HAD-IC family P-type ATPase 131 442 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7707g00001 1323 NCBIfam HAD-IC family P-type ATPase 645 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7707g00001 1323 PANTHER CATION TRANSPORTING ATPASE 977 1302 - -
Vium7707g00001 1323 FunFam Calcium-transporting ATPase 577 725 - -
Vium7707g00001 1323 FunFam Calcium-transporting ATPase 389 584 - -
Vium7707g00001 1323 Gene3D - 1055 1302 - -
Vium7707g00001 1323 Gene3D - 698 941 - -
Vium7707g00001 1323 FunFam Calcium-transporting ATPase 697 943 - -
Vium7707g00001 1323 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 941 IPR023298 -
Vium7707g00001 1323 SUPERFAMILY HAD-like 378 785 IPR036412 -
Vium7707g00001 1323 SUPERFAMILY Calcium ATPase, transmembrane domain M 1091 1302 IPR023298 -
Vium7707g00001 1323 SUPERFAMILY Calcium ATPase, transduction domain A 164 260 IPR008250 -
Vium7707g00001 1323 Gene3D - 48 237 - -
Vium7707g00001 1323 SMART Cation_ATPase_N_a_2 44 116 IPR004014 -
Vium7707g00001 1323 SFLD Haloacid Dehalogenase 361 733 - -
Vium7707g00001 1323 Gene3D - 392 581 IPR023299 GO:0000166
Vium7707g00001 1323 CDD P-type_ATPase_Ca_PMCA-like 68 813 - -
Vium7707g00001 1323 PRINTS H+-transporting ATPase (proton pump) signature 680 696 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7707g00001 1323 PRINTS H+-transporting ATPase (proton pump) signature 537 555 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7707g00001 1323 PRINTS H+-transporting ATPase (proton pump) signature 712 737 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7707g00001 1323 FunFam Calcium-transporting ATPase 138 262 - -
Vium7707g00001 1323 Pfam Cation transporter/ATPase, N-terminus 47 111 IPR004014 -
Vium7707g00001 1323 FunFam Calcium-transporting ATPase 1058 1304 - -
Vium7707g00001 1323 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 385 589 IPR023299 GO:0000166
Vium7707g00001 1323 SUPERFAMILY HAD-like 972 1146 IPR036412 -
Vium7707g00001 1323 Pfam Cation transporting ATPase, C-terminus 1126 1299 IPR006068 -
Vium7707g00001 1323 Pfam Cation transporting ATPase, C-terminus 765 938 IPR006068 -
Vium7707g00001 1323 SFLD p-type atpase 361 733 IPR044492 -
Vium7707g00001 1323 Gene3D - 94 391 - -
Vium7707g00001 1323 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7707g00001 Vium-Chr7707 12119 23146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7707g00001 2 959 Primary Pumps ATPases AT3G57330 72.158 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7707g00001 K01537 - gmx:100791934 1706.03