Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7705g00005 ATGGATTCATTTTTTCCCGAGAAACTTCTGGGTGAGATCTTCTGGGATCAACTTTTGCCCACTGATCAAAGTGATGTAGTTCAAAATTCCCGTATCATCAAGGCTGAAGCTTTCCCTCCAGCAACTCAAAGTGCTTTTCTTCAATATAGAGACCTACCCAGAAGAAATAACCCTCTGAACGGGTCAAATTCAGAGAGCATGAGTAAGAGGATGCTTGCATTCTTGAGAAAAAGTTCCCCTGTGGAGAGAAATAACGTAGAAGAGAATGAAAGAGATCGCAGTTTCAGGCACATGATCAACGAGAGAATGAGAAGACAGAGACAGAGACAATGTTGCTTGGCCCTGCATTCAATTTTACCACACGGAACCAAAACGGATAATAATTCTGTAATTCAAACAGCAGCAAAGGAGATTGTAAGGCTAAAAGGATGCAGAGAAGAGCTGCAGAGGAAAAATAGCGAGGCTGAAGGTGTTTGTGTGAGGAAGAAAGATGGAGGAAGAAAGATTGCATATTTGAGAGTTGCAGATCCTGAGTGTGGAATTGATTCAATGGTTGAGAGGCTGAAGTGGTTGAAAGAGGAAGGAGTGGAGAGCAGGAGGATCAAATCAAGTTTCTCCCCAAAGGAGTTGTTTGCAGTGTTAGAGATAGAGAGTGGTGAGGAGGTATAA 669 0.426 MDSFFPEKLLGEIFWDQLLPTDQSDVVQNSRIIKAEAFPPATQSAFLQYRDLPRRNNPLNGSNSESMSKRMLAFLRKSSPVERNNVEENERDRSFRHMINERMRRQRQRQCCLALHSILPHGTKTDNNSVIQTAAKEIVRLKGCREELQRKNSEAEGVCVRKKDGGRKIAYLRVADPECGIDSMVERLKWLKEEGVESRRIKSSFSPKELFAVLEIESGEEV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7705g00005 222 Gene3D - 82 157 IPR036638 GO:0046983
Vium7705g00005 222 Coils Coil 131 151 - -
Vium7705g00005 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
Vium7705g00005 222 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 218 IPR044658 -
Vium7705g00005 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 154 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7705g00005 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 34.783 2.56e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7705g00005 - - pvu:PHAVU_007G280700g 360.147