Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7704g00005 ATGGAGCTTCGTTCTCGTCGACGCCTTTCGAATCCCTCAGTGTCTGGGAATGAGCAGCAGCCTAAGGATGATACTGTTGTGGAAGATGAAACCAAGGGCCAGAGTAGCAACAATAAAGACAAAGGTGTTTCCGTTATGTTGTCTGATTCGGATGTAGTTTCTGGTTCCGATTCCGATTCCGATTATGAAGATGAAGAATTGGTTGGGGGCTCGCTGCTGGACTTGAATAAATATCCATTTTCAAGCATCAGTGTTTCTGACGGAGAAGATTATGGTTCTGATTCATCTGATGGTGACATACTTTTATTCAAGAAGGCAAAGGTTCCGGGGTCCAGAGCGAGAAGAAAGAGTATGAACACAGAAAAAGGAGAACCGAGTGATGTGGTGAGGGTGGTGGATCGTGAATATTCAATGATTTCACCAGTATTGGTTCCATCTGCTTTTAAGGGAACTAAGAAGAGGAAATATACAAAAAAAGGAAGTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAAGAGCAAGAGAAATGGATTGATCAGCATATAGCAGAAGATTTTGACTTAGATATTCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAGGGAATGGTTAGCCTGGGCTTTGAAACAAGAACATTCTTCAAGTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAAGACAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAACCTGTTGCCTGCTATCAAAGGAACACTTGTCATATGTCCAGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGTTTTACTTTAAAAGGAAGCACCAAGGTGCTGGTCTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGATTTGCAGATTATGATTTTGTGATAACTACATACTTTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCAAGTAAGTTGATGTATCATCAAAGCTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGGGAAGTTACTAAAGGGAAGACCAAGGAATGCGAAAGTAGCAAGATTTTGAAGGGTTCTATCAAGAAAAAGGGAGACAAAATGTGCATAGATATGGAAGATTCTGATGCTGTACCTGTACGTAGCGATAGGTCATTTCTCCATGCTGTTAAATGGCAAAGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCTACCTACAAATGGGCGTTGAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCGCTGATACGATTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCCGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATACTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCGTTGAGAAAGGATTGCCTAGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATACATTGAAGCAAATACACTGATGCATAATTATGCTCATATATTTGATCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTTCAGGTTCAAGAAGTGCAGTTATGGCCAACAATGCTACTACCGTTGAACAAATTTGTGGTATATGCCACGAGCCAGTAGAAGATCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCCGTGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCTGCTTGCTCCAAATTACTTACAGTTGATTTAACATCCAACAAGGATGCTGGGGATCAGGTTAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACGAGTACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCGTTCTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGAATGCTAGGGATGCTGCCATTCGAAGATTTACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACACGTCTTCCTTATGGACCCTTGGTGGAACCCGGCCGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATACAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTTTGAAACTCCAAGAGAAGAAAGAACTCGTGTTTGAAGGGACTATCGGTGGTTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTGTTTGTTACCTAA 2766 0.4129 MELRSRRRLSNPSVSGNEQQPKDDTVVEDETKGQSSNNKDKGVSVMLSDSDVVSGSDSDSDYEDEELVGGSLLDLNKYPFSSISVSDGEDYGSDSSDGDILLFKKAKVPGSRARRKSMNTEKGEPSDVVRVVDREYSMISPVLVPSAFKGTKKRKYTKKGSKGDSRPVLLWNAWEEEQEKWIDQHIAEDFDLDIQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSSSRGGILADEMGMGKTIQAIALVLAKREFQDSCEPDQSIPCSSNLLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYFVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQSYFCGPDAVRTEKQSKQAKKKREVTKGKTKECESSKILKGSIKKKGDKMCIDMEDSDAVPVRSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSGSRSAVMANNATTVEQICGICHEPVEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTSNKDAGDQVKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLNARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7704g00005 921 Pfam SNF2-related domain 227 643 IPR000330 GO:0005524|GO:0140658
Vium7704g00005 921 Gene3D - 215 351 IPR038718 -
Vium7704g00005 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 568 IPR027417 -
Vium7704g00005 921 ProSitePatterns Zinc finger RING-type signature. 682 691 IPR017907 -
Vium7704g00005 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 737 IPR013083 -
Vium7704g00005 921 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 44 919 - -
Vium7704g00005 921 SMART ultradead3 209 501 IPR014001 -
Vium7704g00005 921 MobiDBLite consensus disorder prediction 37 55 - -
Vium7704g00005 921 CDD DEXDc_SHPRH-like 213 511 - -
Vium7704g00005 921 SMART helicmild6 782 865 IPR001650 -
Vium7704g00005 921 MobiDBLite consensus disorder prediction 22 36 - -
Vium7704g00005 921 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 911 IPR001650 -
Vium7704g00005 921 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Vium7704g00005 921 Pfam Helicase conserved C-terminal domain 751 865 IPR001650 -
Vium7704g00005 921 CDD SF2_C_SNF 749 876 - -
Vium7704g00005 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 919 IPR027417 -
Vium7704g00005 921 Gene3D - 371 588 IPR038718 -
Vium7704g00005 921 SUPERFAMILY RING/U-box 663 714 - -
Vium7704g00005 921 SMART ring_2 667 707 IPR001841 -
Vium7704g00005 921 Pfam Zinc finger, C3HC4 type (RING finger) 667 707 IPR018957 GO:0046872
Vium7704g00005 921 Gene3D - 590 919 IPR027417 -
Vium7704g00005 921 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 496 IPR014001 -
Vium7704g00005 921 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7704g00005 Vium-Chr7704 39418 46922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7704g00005 140 921 RAD5 or RAD16-like Gene Family AT1G05120 66.709 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium7704g00005 SNF2_N 2.3e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7704g00005 K15083 - gmx:100786366 1520.37