Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7704g00004 ATGGAGCTTCGTTCTCGTCGACGCCTTTCGAATCCCTCAGTGTCTGGTACTATCAATTGTTCCGGGAATGAGCAGCAGCCTAAGGATGATACTGTTGTGGAAGATGAAACCAAGGGCCAGAGTAGCAACAATAAAGACAAAGGTGTTTCCGTTATGTTGTCTGATTCGGATGTAGTTTCTGGTTCCGATTCCGATTCCGATTATGAAGATGAAGAATTGGTTGGGGGCTCGCTGCTGGACTTGAATAAATATCCATTTTCAAGCATCAGTGTTTCTGACGGAGAAGATTATGGTTCTGATTCATCTGATGGTGACATACTTTTATTCAAGAAGGCAAAGGTTCCGGGGTCCAGAGCGAGAAGAAAGAGTATGAACACAGAAAAAGGAGAACCGAGTGATGTGGTGAGGGTGGTGGATCGTGAATATTCAATGATTTCACCAGTATTGGTTCCATCTGCTTTTAAGGGAACTAAGAAGAGGAAATATACAAAAAAAGGAAGTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAAGAGCAAGAGAAATGGATTGATCAGCATATAGCAGAAGATTTTGACTTAGATATTCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAGGGAATGGTTAGCCTGGGCTTTGAAACAAGAACATTCTTCAAGTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAAGACAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAACCTGTTGCCTGCTATCAAAGGAACACTTGTCATATGTCCAGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGTTTTACTTTAAAAGGAAGCACCAAGGTGCTGGTCTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGATTTGCAGATTATGATTTTGTGATAACTACATACTTTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCAAGTAAGTTGATGTATCATCAAAGCTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGGGAAGTTACTAAAGGGAAGACCAAGGAATGCGAAAGTAGCAAGATTTTGAAGGGTTCTATCAAGAAAAAGGGAGACAAAATGTGCATAGATATGGAAGATTCTGATGCTGTACCTGTACGTAGCGATAGGTCATTTCTCCATGCTGTTAAATGGCAAAGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCTACCTACAAATGGGCGTTGAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCGCTGATACGATTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCCGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATACTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCGTTGAGAAAGGATTGCCTAGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATACATTGAAGCAAATACACTGATGCATAATTATGCTCATATATTTGATCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTTCAGGTTCAAGAAGTGCAGTTATGGCCAACAATGCTACTACCGTTGAACAAATTTGTGGTATATGCCACGAGCCAGTAGAAGATCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCCGTGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCTGCTTGCTCCAAATTACTTACAGTTGATTTAACATCCAACAAGGATGCTGGGGATCAGGTTAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACGAGTACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCGTTCTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGAATGCTAGGGATGCTGCCATTCGAAGATTTACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACACGTCTTCCTTATGGACCCTTGGTGGAACCCGGCCGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATACAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTTTGAAACTCCAAGAGAAGAAAGAACTCGTGTTTGAAGGGACTATCGGTGGTTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTGTTTGTTACCTAA 2784 0.4127 MELRSRRRLSNPSVSGTINCSGNEQQPKDDTVVEDETKGQSSNNKDKGVSVMLSDSDVVSGSDSDSDYEDEELVGGSLLDLNKYPFSSISVSDGEDYGSDSSDGDILLFKKAKVPGSRARRKSMNTEKGEPSDVVRVVDREYSMISPVLVPSAFKGTKKRKYTKKGSKGDSRPVLLWNAWEEEQEKWIDQHIAEDFDLDIQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSSSRGGILADEMGMGKTIQAIALVLAKREFQDSCEPDQSIPCSSNLLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYFVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQSYFCGPDAVRTEKQSKQAKKKREVTKGKTKECESSKILKGSIKKKGDKMCIDMEDSDAVPVRSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSGSRSAVMANNATTVEQICGICHEPVEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTSNKDAGDQVKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLNARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7704g00004 927 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 743 IPR013083 -
Vium7704g00004 927 Pfam Helicase conserved C-terminal domain 757 871 IPR001650 -
Vium7704g00004 927 CDD SF2_C_SNF 755 882 - -
Vium7704g00004 927 Gene3D - 377 594 IPR038718 -
Vium7704g00004 927 Pfam Zinc finger, C3HC4 type (RING finger) 673 713 IPR018957 GO:0046872
Vium7704g00004 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 574 IPR027417 -
Vium7704g00004 927 Pfam SNF2-related domain 233 649 IPR000330 GO:0005524|GO:0140658
Vium7704g00004 927 Gene3D - 596 925 IPR027417 -
Vium7704g00004 927 SMART ring_2 673 713 IPR001841 -
Vium7704g00004 927 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 753 917 IPR001650 -
Vium7704g00004 927 Gene3D - 221 357 IPR038718 -
Vium7704g00004 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 925 IPR027417 -
Vium7704g00004 927 MobiDBLite consensus disorder prediction 1 70 - -
Vium7704g00004 927 ProSitePatterns Zinc finger RING-type signature. 688 697 IPR017907 -
Vium7704g00004 927 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 56 925 - -
Vium7704g00004 927 MobiDBLite consensus disorder prediction 43 61 - -
Vium7704g00004 927 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 502 IPR014001 -
Vium7704g00004 927 SUPERFAMILY RING/U-box 669 720 - -
Vium7704g00004 927 MobiDBLite consensus disorder prediction 8 27 - -
Vium7704g00004 927 CDD DEXDc_SHPRH-like 219 517 - -
Vium7704g00004 927 MobiDBLite consensus disorder prediction 28 42 - -
Vium7704g00004 927 SMART helicmild6 788 871 IPR001650 -
Vium7704g00004 927 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Vium7704g00004 927 SMART ultradead3 215 507 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7704g00004 Vium-Chr7704 39417 46922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7704g00004 146 927 RAD5 or RAD16-like Gene Family AT1G05120 66.709 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium7704g00004 SNF2_N 2.3e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7704g00004 K15083 - gmx:100786366 1513.82