Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7698g00003 ATGAGCGATTCTGCATACAGAGTCGAAACCACACCACGCCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTACCGAAAATCCGATCCTTTCAAGATCGGAAAGTGGAACTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTTCCAGAAATATCGAATCTTACAAGAGACAACCCTCCAATTGCATCTTTCATCATTCGGGTTGTAAGTTCTGTTGGAGATCGCAGGGCCATCATACACCCAGAAATAAAAGACAAAGTTCTAAAGAACAACGAGGATTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTTCTAGATTTGAAGACTGCATCCCCAAACAGTGGAGAACCTTGTTCCATTTGGGCAGAAGGATTTACTCAGCAAAGATCAAATGCAAATGCCATAGAGTGTCTTGGTAGAATGCTAACAGAAGGAATCCACACTGACATCACCATCAATGTTTCTGATGGAAGTATTGGAGCTCATAGAGCTGTTCTTGCTGCAAGATCACCCGTATTCCGCAGCATGTTTTCACATAATCTTCAAGAGAAAGAGTTGTCAACCATAAACATCTCAGATATGTCACTCGATTCATGCCAGACTTTTCTCAATTATCTCTATGGAATCATCAAACATGAAGAGTTTCTGATGCATAGGCTGGCCCTTCTTCGTGCAGCTGACAAGTATGACATATCTGATCTAAGAGATGCATGCCATGAGAGTCTTCTTGAAGACATTGACACAAAAAATGTACTTGAGAGGCTCCAAAACGCTTCTCTATATCAGTTGATGAAACTGAAGATGACTTGTATTCGGTATCTTGTGAAGTTTGGCAAAATATATGAAATCCGTGATGATTTCAACACCTTTTTGCATAATGCAGATAGGGATCTGATTGCCGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTTTGA 987 0.4043 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRDNPPIASFIIRVVSSVGDRRAIIHPEIKDKVLKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNSGEPCSIWAEGFTQQRSNANAIECLGRMLTEGIHTDITINVSDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSLDSCQTFLNYLYGIIKHEEFLMHRLALLRAADKYDISDLRDACHESLLEDIDTKNVLERLQNASLYQLMKLKMTCIRYLVKFGKIYEIRDDFNTFLHNADRDLIAEVFHEVLDAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7698g00003 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Vium7698g00003 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Vium7698g00003 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Vium7698g00003 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Vium7698g00003 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Vium7698g00003 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Vium7698g00003 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7698g00003 Vium-Chr7698 40241 42914 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium7698g00003 BTB 1.1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7698g00003 K10523 - gmx:100790186 632.098