Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7697g00002 ATGAAGCGAGCAAGGAAATCCAACCGGGTTTCGTGGGCCACTGGAGGGAACCTGTGTCAGGTGAAATTGTTTTTGTCTGACGATTTCCCCTCAAAAGTAGGCCAACATTCGCAAGATCATCTTCAAATAAAGACATCGATGCTAAATTCAAATTCCGCCATTATTGATCCTACTGATTTGCCCCCTGGGTTTGAAAGCAGTCATTTCCTAAAACAAACAAGGGTTGATTTGTCCTGCATTTCCCAGATAAAATGGGAATGTCCTCTGCCGTTTATTGTCAATCCTGATTGGCGTGTTGTAGCGGGCGAAGAAAGTAGGGAGAAAGAAAATCAGAAAGCGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCTAGTCCTTCTGTCTCTATGGAAGTAGAAGAGGAAGATTATGATGATGACGTTACTCCCCTCATCCCTATCATTCCCATTGAAGAGGAAGAACCTATGGATATTTTACCCGAAGTGGCAGTAGCTGGGAACCCTTTCCCCAATGTGCAGCCGAATAACCCTCTGCAACATATATCTGCTGAAACTTCCATTCGTTCACCCTCAAACGGCTTTTATACTGATTCCTCGGATCCCTGTTCAGGGATCCCCTTGGGTGCGGGGGTATCTTTCGGTATGGAAGCTGATTTGGCAGCTTCTGTTGTTGCAACCATTATGAGGAGTTCTGAGCAGGGATCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCCAAAATGCTCGACAAGTTGATTAATGAACATAGAACTGCAGCAAGCACCACAAGTGCTTCCACAAGTACTGTGGACACCACTCCTGGTGTTAAGCCTGACACTCCAGTTCTGTTGTCTACATCTGATGTGAAAGCTTCGGGGGCTACACCTACAAGTGCAGTGGGTTCATTGCCTTTTGGTCTGAAAACTACATATCCATCAGTTCCAGTATTGAGTCCTACACCTGACAAGCCATCCACTCTGTCAGTGCCTGCTGTTCCATCAGTCTCACTGTTCTCTCCGGCTCATGATAATCCAGTTACTGCATCAGTTCCATTGTCTAGGCCTTTATCTGGTAAGCCAGGAACACCCTCAGTTTCATTGCTCACAAATACACCTGCATCTCTTATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAAGTGGTATTTCCCCTGCATTAAATACTCAGCCTCACCAAGATACAGCTCTGGCATCTGGGCCAAAGCGAGTCGCTGCAATGGGCGGTGAATTAAGCACTGGTCCAGTGCCATCTCTTACCAGGAACTTGCATGCTGTTGTGAATCCGGTGCAATCCCCTGCTAGTACGTTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGGGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTAATCTCCAAGATATGAAACCGGTACATAACTTTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTCCAATTGCCCTTATCAGCACGATGTTTCAGCTCAGTGGGGAGCTGGTAACATCTTAGGGGCACAGAGTGCAAAAAGATTGAAATCGGGACCATAG 1698 0.4505 MKRARKSNRVSWATGGNLCQVKLFLSDDFPSKVGQHSQDHLQIKTSMLNSNSAIIDPTDLPPGFESSHFLKQTRVDLSCISQIKWECPLPFIVNPDWRVVAGEESREKENQKARENRVLEAVYPRLSAIPPSPSVSMEVEEEDYDDDVTPLIPIIPIEEEEPMDILPEVAVAGNPFPNVQPNNPLQHISAETSIRSPSNGFYTDSSDPCSGIPLGAGVSFGMEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKMLDKLINEHRTAASTTSASTSTVDTTPGVKPDTPVLLSTSDVKASGATPTSAVGSLPFGLKTTYPSVPVLSPTPDKPSTLSVPAVPSVSLFSPAHDNPVTASVPLSRPLSGKPGTPSVSLLTNTPASLIPRSVSKQIHHVSSGISPALNTQPHQDTALASGPKRVAAMGGELSTGPVPSLTRNLHAVVNPVQSPASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSNLQDMKPVHNFKQGEVKHKIQKPCIYFKSSKGCRNGSNCPYQHDVSAQWGAGNILGAQSAKRLKSGP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7697g00002 565 MobiDBLite consensus disorder prediction 269 285 - -
Vium7697g00002 565 ProSiteProfiles Zinc finger C3H1-type profile. 517 544 IPR000571 GO:0046872
Vium7697g00002 565 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 563 - -
Vium7697g00002 565 MobiDBLite consensus disorder prediction 269 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7697g00002 Vium-Chr7697 8179 16120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7697g00002 82 173 Homeobox Transcription Factor Family AT4G02560 38.947 4.69e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium7697g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7697g00002 - - pvu:PHAVU_003G260700g 794.267