Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7686g00012 ATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTAACGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGTCTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGTAGTTTTTGCTTGTGAAGGGACAGAGTTGAAGGGCTACTTGCAAAAACAGGCAAAGAGCAAAACTATAACTAAACACATGCGCAATGGGGGCATAAATAGTTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCTTCAAACCGGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTCTCCATCGAAGAACAAACTTAATGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACTCTACTAGGGAAAAGAATAGTAGAATCTCCCTTATTTCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAACATTCATCTGGAACATTGATGTTTATAGACATGATGCAGCGTATGCAAGGACTAGCATCATTTCCAAAAGATGACGAAACTTCTTCACTTCAGGAAGATCTGTGCTTGGGACATAGGAAGCCAGTCACCCCTACCAAACTTGATAAAGACAATGAATCATGCTCTATGCATGCATTGAGAACGAGTGTAAACTCGGTTAATTGTCTGGACCTTGATTCGTATCATTTGGGCATTCAAAGCAAAGACTTCCTTGATCTAACTTGGCGAGAAGAAACATGTCAGGATGATGAGGGAATTCACGAGACTCCAATTTATAAGAGAAGAGTGTCAAATGAAGCATATAATGCTGGTCAAATGGAAAATCTTATGGAGATTGAGACTTCTTCGTTGGTTGCAGATGCATGCATTAATGACATGAAAGATGAAGAACTTAGTCCACGTTTAACGAATTTCATTAAAAGTGGTGTAGTTCCTGAGTCTCCCATTGATGAAAGAGGGAAATCAGGATACCATTCTGCTATACGTGACTGTATTTTACCTGTCAGTGTTCACAAAGAACAGAATGTTAGTTCTTTAAGCTCAGGGGAAACTAAAATGGTCGACAATGAGAAGGGCACTGATAAGAATGTCAGTACTTCCTCTTTCAATGAAACTCAAAGCCCTTTACTTGACCTGAAGAATTGTACAATTAGAAGAGGACGAGTCTTTCTTTCCCAAACTGAGGAAGGCCATGTACATAACTCTGACCTAAGCCTTGGTGAAGAAGCACTTCCAGCAGATTGTGGTGAAATGTCTGAAAGCATTAAACCTTCACGCAAATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAATATTAAATTTTTTTATTCAACAGTGCACTTTCTGAAGTCATCCCGTGCCTCCAATCCCGCACAATATGAGCATGGACGAGGTAAAAGGAAATCAGCATACAATGTGAGAGACTTCATTGAGGAGGAAGCGGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGTGAGGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTCAAGCTAGTAGAATGGACATGATGACAATTTACAGCTCTGATGCAGGCGTTCTTTGCTCAGTCAAGCACCGAGTAATGGACCGCTTGATTTTTCTGCCACCTTCACTCCCGACTGTGTGA 1809 0.4035 MKGQSQKVQQAVLTKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLQKQAKSKTITKHMRNGGINSFSFHPSPRMIPHVFKPEVQYVELSIEKFIPRQKNVKDDELHISPSKNKLNVAEIDLLETYFHSTREKNSRISLISFPHFQTFPSRVHKVKHSSGTLMFIDMMQRMQGLASFPKDDETSSLQEDLCLGHRKPVTPTKLDKDNESCSMHALRTSVNSVNCLDLDSYHLGIQSKDFLDLTWREETCQDDEGIHETPIYKRRVSNEAYNAGQMENLMEIETSSLVADACINDMKDEELSPRLTNFIKSGVVPESPIDERGKSGYHSAIRDCILPVSVHKEQNVSSLSSGETKMVDNEKGTDKNVSTSSFNETQSPLLDLKNCTIRRGRVFLSQTEEGHVHNSDLSLGEEALPADCGEMSESIKPSRKFKRLRKAEDTESNRNQKNIKFFYSTVHFLKSSRASNPAQYEHGRGKRKSAYNVRDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAASQPQASRMDMMTIYSSDAGVLCSVKHRVMDRLIFLPPSLPTV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7686g00012 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 99 IPR027417 -
Vium7686g00012 602 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 1 567 - -
Vium7686g00012 602 MobiDBLite consensus disorder prediction 459 478 - -
Vium7686g00012 602 MobiDBLite consensus disorder prediction 456 478 - -
Vium7686g00012 602 SMART helicmild6 1 65 IPR001650 -
Vium7686g00012 602 MobiDBLite consensus disorder prediction 529 564 - -
Vium7686g00012 602 Pfam Helicase conserved C-terminal domain 4 64 IPR001650 -
Vium7686g00012 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 105 IPR001650 -
Vium7686g00012 602 MobiDBLite consensus disorder prediction 381 408 - -
Vium7686g00012 602 Gene3D - 1 99 IPR027417 -
Vium7686g00012 602 MobiDBLite consensus disorder prediction 531 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7686g00012 Vium-Chr7686 53039 69241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7686g00012 6 63 Eukaryotic Initiation Factors Gene Family AT3G13920 36.207 1.67e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7686g00012 K10896 - vra:106756418 1081.63