Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium7686g00011 | ATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTAACGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGTCTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGTAGTTTTTGCTTGTGAAGGGACAGAGTTGAAGGGCTACTTGCAAAAACAGGCAAAGAGCAAAACTATAACTAAACACATGCGCAATGGGGGCATAAATAGTTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCTTCAAACCGGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTCTCCATCGAAGAACAAACTTAATGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACTCTACTAGGGAAAAGAATAGTAGAATCTCCCTTATTTCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAACATTCATCTGGAACATTGATGTTTATAGACATGATGCAGCGTATGCAAGGACTAGCATCATTTCCAAAAGATGACGAAACTTCTTCACTTCAGGAAGATCTGTGCTTGGGACATAGGAAGCCAGTCACCCCTACCAAACTTGATAAAGACAATGAATCATGCTCTATGCATGCATTGAGAACGAGTGTAAACTCGGTTAATTGTCTGGACCTTGATTCGTATCATTTGGGCATTCAAAGCAAAGACTTCCTTGATCTAACTTGGCGAGAAGAAACATGTCAGGATGATGAGGGAATTCACGAGACTCCAATTTATAAGAGAAGAGTGTCAAATGAAGCATATAATGCTGGTCAAATGGAAAATCTTATGGAGATTGAGACTTCTTCGTTGGTTGCAGATGCATGCATTAATGACATGAAAGATGAAGAACTTAGTCCACGTTTAACGAATTTCATTAAAAGTGGTGTAGTTCCTGAGTCTCCCATTGATGAAAGAGGGAAATCAGGATACCATTCTGCTATACGTGACTGTATTTTACCTGTCAGTGTTCACAAAGAACAGAATGTTAGTTCTTTAAGCTCAGGGGAAACTAAAATGGTCGACAATGAGAAGGGCACTGATAAGAATGTCAGTACTTCCTCTTTCAATGAAACTCAAAGCCCTTTACTTGACCTGAAGAATTGTACAATTAGAAGAGGACGAGTCTTTCTTTCCCAAACTGAGGAAGGCCATGTACATAACTCTGACCTAAGCCTTGGTGAAGAAGCACTTCCAGCAGATTGTGGTGAAATGTCTGAAAGCATTAAACCTTCACGCAAATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAATATTAAATTTTTTTATTCAACAGTGCACTTTCTGAAGTCATCCCGTGCCTCCAATCCCGCACAATATGAGCATGGACGAGGTAAAAGGAAATCAGCATACAATGTGAGAGACTTCATTGAGGAGGAAGCGGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGTGAGGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTCAAGCTAGTAGAATGGACATGATGACAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGAGTAATGGACCGCTTGATTTTTCTGCCACCTTCACTCCCGACTGTGTGACTGTGGCAGCCAGTACTAGTGAATGTGGGGATTCTTCAGGGAAGTCATTCAATCATTTACATACAGAGCCAACCAAAGAGTCAGCAAATCGGACTTCAGAATCCGTCACCATCGACCAGTTAACCTCAGAAGCAGTGTTTTCAAGTTGTTGTCCTAAGGGAAATGGGACAGAGATAAAAAGTCACAAACGAAGATTGTCGTTTTACCACTCTGAACACTTCCCGACTATGAACCTTGAACAAGAATTTGCTCTTCAATCAAAGAAAGAAGTGGGGGATGTGGATGCAATTACAAATGTTTTGTGTGATGATCAGTTTTATAATGATCTCGATCTTGACGAGTTGGAGGCTAAAGCAACTTTGCTTCTAAAACGGAAATTAGATTTGTCCATTCAGAAGCAAGATAAAGTCTCTCAATCTCACTTACCCAACCTTGATATTTTTGGGTCTCCTTCATTTGATCTTGGGATATGA | 2271 | 0.4025 | MKGQSQKVQQAVLTKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLQKQAKSKTITKHMRNGGINSFSFHPSPRMIPHVFKPEVQYVELSIEKFIPRQKNVKDDELHISPSKNKLNVAEIDLLETYFHSTREKNSRISLISFPHFQTFPSRVHKVKHSSGTLMFIDMMQRMQGLASFPKDDETSSLQEDLCLGHRKPVTPTKLDKDNESCSMHALRTSVNSVNCLDLDSYHLGIQSKDFLDLTWREETCQDDEGIHETPIYKRRVSNEAYNAGQMENLMEIETSSLVADACINDMKDEELSPRLTNFIKSGVVPESPIDERGKSGYHSAIRDCILPVSVHKEQNVSSLSSGETKMVDNEKGTDKNVSTSSFNETQSPLLDLKNCTIRRGRVFLSQTEEGHVHNSDLSLGEEALPADCGEMSESIKPSRKFKRLRKAEDTESNRNQKNIKFFYSTVHFLKSSRASNPAQYEHGRGKRKSAYNVRDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAASQPQASRMDMMTIYRRSLLSQAPSNGPLDFSATFTPDCVTVAASTSECGDSSGKSFNHLHTEPTKESANRTSESVTIDQLTSEAVFSSCCPKGNGTEIKSHKRRLSFYHSEHFPTMNLEQEFALQSKKEVGDVDAITNVLCDDQFYNDLDLDELEAKATLLLKRKLDLSIQKQDKVSQSHLPNLDIFGSPSFDLGI | 756 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium7686g00011 | 756 | PANTHER | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | 1 | 740 | - | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 456 | 478 | - | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 459 | 478 | - | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 551 | 565 | - | - | |
Vium7686g00011 | 756 | Pfam | Helicase conserved C-terminal domain | 4 | 64 | IPR001650 | - | |
Vium7686g00011 | 756 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 105 | IPR001650 | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 381 | 408 | - | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 531 | 547 | - | - | |
Vium7686g00011 | 756 | Gene3D | - | 1 | 99 | IPR027417 | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 528 | 565 | - | - | |
Vium7686g00011 | 756 | MobiDBLite | consensus disorder prediction | 612 | 632 | - | - | |
Vium7686g00011 | 756 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 98 | IPR027417 | - | |
Vium7686g00011 | 756 | SMART | helicmild6 | 1 | 65 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium7686g00011 | Vium-Chr7686 | 52512 | 69237 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium7686g00011 | 6 | 63 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 36.207 | 2.13e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium7686g00011 | K10896 | - | vra:106756418 | 1436.01 |