Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7686g00011 ATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTAACGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGTCTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGTAGTTTTTGCTTGTGAAGGGACAGAGTTGAAGGGCTACTTGCAAAAACAGGCAAAGAGCAAAACTATAACTAAACACATGCGCAATGGGGGCATAAATAGTTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCTTCAAACCGGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTCTCCATCGAAGAACAAACTTAATGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACTCTACTAGGGAAAAGAATAGTAGAATCTCCCTTATTTCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAACATTCATCTGGAACATTGATGTTTATAGACATGATGCAGCGTATGCAAGGACTAGCATCATTTCCAAAAGATGACGAAACTTCTTCACTTCAGGAAGATCTGTGCTTGGGACATAGGAAGCCAGTCACCCCTACCAAACTTGATAAAGACAATGAATCATGCTCTATGCATGCATTGAGAACGAGTGTAAACTCGGTTAATTGTCTGGACCTTGATTCGTATCATTTGGGCATTCAAAGCAAAGACTTCCTTGATCTAACTTGGCGAGAAGAAACATGTCAGGATGATGAGGGAATTCACGAGACTCCAATTTATAAGAGAAGAGTGTCAAATGAAGCATATAATGCTGGTCAAATGGAAAATCTTATGGAGATTGAGACTTCTTCGTTGGTTGCAGATGCATGCATTAATGACATGAAAGATGAAGAACTTAGTCCACGTTTAACGAATTTCATTAAAAGTGGTGTAGTTCCTGAGTCTCCCATTGATGAAAGAGGGAAATCAGGATACCATTCTGCTATACGTGACTGTATTTTACCTGTCAGTGTTCACAAAGAACAGAATGTTAGTTCTTTAAGCTCAGGGGAAACTAAAATGGTCGACAATGAGAAGGGCACTGATAAGAATGTCAGTACTTCCTCTTTCAATGAAACTCAAAGCCCTTTACTTGACCTGAAGAATTGTACAATTAGAAGAGGACGAGTCTTTCTTTCCCAAACTGAGGAAGGCCATGTACATAACTCTGACCTAAGCCTTGGTGAAGAAGCACTTCCAGCAGATTGTGGTGAAATGTCTGAAAGCATTAAACCTTCACGCAAATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAATATTAAATTTTTTTATTCAACAGTGCACTTTCTGAAGTCATCCCGTGCCTCCAATCCCGCACAATATGAGCATGGACGAGGTAAAAGGAAATCAGCATACAATGTGAGAGACTTCATTGAGGAGGAAGCGGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGTGAGGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTCAAGCTAGTAGAATGGACATGATGACAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGAGTAATGGACCGCTTGATTTTTCTGCCACCTTCACTCCCGACTGTGTGACTGTGGCAGCCAGTACTAGTGAATGTGGGGATTCTTCAGGGAAGTCATTCAATCATTTACATACAGAGCCAACCAAAGAGTCAGCAAATCGGACTTCAGAATCCGTCACCATCGACCAGTTAACCTCAGAAGCAGTGTTTTCAAGTTGTTGTCCTAAGGGAAATGGGACAGAGATAAAAAGTCACAAACGAAGATTGTCGTTTTACCACTCTGAACACTTCCCGACTATGAACCTTGAACAAGAATTTGCTCTTCAATCAAAGAAAGAAGTGGGGGATGTGGATGCAATTACAAATGTTTTGTGTGATGATCAGTTTTATAATGATCTCGATCTTGACGAGTTGGAGGCTAAAGCAACTTTGCTTCTAAAACGGAAATTAGATTTGTCCATTCAGAAGCAAGATAAAGTCTCTCAATCTCACTTACCCAACCTTGATATTTTTGGGTCTCCTTCATTTGATCTTGGGATATGA 2271 0.4025 MKGQSQKVQQAVLTKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLQKQAKSKTITKHMRNGGINSFSFHPSPRMIPHVFKPEVQYVELSIEKFIPRQKNVKDDELHISPSKNKLNVAEIDLLETYFHSTREKNSRISLISFPHFQTFPSRVHKVKHSSGTLMFIDMMQRMQGLASFPKDDETSSLQEDLCLGHRKPVTPTKLDKDNESCSMHALRTSVNSVNCLDLDSYHLGIQSKDFLDLTWREETCQDDEGIHETPIYKRRVSNEAYNAGQMENLMEIETSSLVADACINDMKDEELSPRLTNFIKSGVVPESPIDERGKSGYHSAIRDCILPVSVHKEQNVSSLSSGETKMVDNEKGTDKNVSTSSFNETQSPLLDLKNCTIRRGRVFLSQTEEGHVHNSDLSLGEEALPADCGEMSESIKPSRKFKRLRKAEDTESNRNQKNIKFFYSTVHFLKSSRASNPAQYEHGRGKRKSAYNVRDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAASQPQASRMDMMTIYRRSLLSQAPSNGPLDFSATFTPDCVTVAASTSECGDSSGKSFNHLHTEPTKESANRTSESVTIDQLTSEAVFSSCCPKGNGTEIKSHKRRLSFYHSEHFPTMNLEQEFALQSKKEVGDVDAITNVLCDDQFYNDLDLDELEAKATLLLKRKLDLSIQKQDKVSQSHLPNLDIFGSPSFDLGI 756
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium7686g00011 756 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 1 740 - -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 456 478 - -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 459 478 - -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 551 565 - -
Vium7686g00011 756 Pfam Helicase conserved C-terminal domain 4 64 IPR001650 -
Vium7686g00011 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 105 IPR001650 -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 381 408 - -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 531 547 - -
Vium7686g00011 756 Gene3D - 1 99 IPR027417 -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 528 565 - -
Vium7686g00011 756 MobiDBLite consensus disorder prediction 612 632 - -
Vium7686g00011 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 98 IPR027417 -
Vium7686g00011 756 SMART helicmild6 1 65 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium7686g00011 Vium-Chr7686 52512 69237 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7686g00011 6 63 Eukaryotic Initiation Factors Gene Family AT3G13920 36.207 2.13e-06 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7686g00011 K10896 - vra:106756418 1436.01