Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7686g00007 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTCACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTACTATCTCGCCACTGCCCCCAACGCCAATCTTATTGATGATTCTGAATCATTTGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGATGATAGTTTCATCGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCGCATGACAACGGACCAAAAATTAGGAAAGTCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAGTCCAGGAAACTGACAATGAAGATAGCCTCCCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAACGAAACGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAACAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGATGCTGGACATGTCCTTGTGGATAGTCAGACATATAGTAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTAAAAATGGAAGAGATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACAGATAAAATGCTGCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATAACAGTCTTGTTGATCTGCCTCTAAGAAATGAACAACACTCGGTTAATGACAGGGATGTTAAAATTTCAGGCAATGCTGCTGAGATGGATCCTAAAAAGAATAGAGCAAAAAGGAAAAAGAAAGAACAAGTAAACAAAAGTGACTATGGATATAATGAAGAAATCTTCCAAGAGGACAACAAGGCCAACAGAGATGCATCAGGGTCACAGAATGCGATTCATAAATTTTTTGAAGAAAAAGAGAAGCATCAGAAGCTAACTAATGAGAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACATTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCATGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTATCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGGCACTCTGACAAAATACCACCAAGTTCATGGTTGATTTATGACATTGAACTAATTAAAGTTCATTGA 1977 0.4077 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATAPNANLIDDSESFGEDIADTETERSDYSDEDGYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKVSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQVQETDNEDSLPISSIYKNKASGRVLDNETDVSVVRGAGDASNNNEEDGGNNIFETNLDAGHVLVDSQTYSREAVPSKHLVDPCTSLDVGDIKSPKKKKKKKEKEAKSSCNGRSIKLDNVINELKMEEMTQVIVAGGKQEQHVDDKETETTDKMLPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHNSLVDLPLRNEQHSVNDRDVKISGNAAEMDPKKNRAKRKKKEQVNKSDYGYNEEIFQEDNKANRDASGSQNAIHKFFEEKEKHQKLTNEKMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVYVERSGETEMMEEDRSKGEDAKHSNVRTLKNGLVIHEQEKGKKDGKIAASGKKISIYYTGKLKENGAIFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPSSWLIYDIELIKVH 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7686g00007 658 MobiDBLite consensus disorder prediction 272 309 - -
Vium7686g00007 658 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vium7686g00007 658 Gene3D - 520 658 IPR046357 GO:0003755
Vium7686g00007 658 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 566 655 IPR001179 GO:0003755
Vium7686g00007 658 MobiDBLite consensus disorder prediction 335 375 - -
Vium7686g00007 658 SUPERFAMILY FKBP-like 506 657 - -
Vium7686g00007 658 Gene3D Nucleoplasmin core domain 1 98 - -
Vium7686g00007 658 MobiDBLite consensus disorder prediction 478 512 - -
Vium7686g00007 658 MobiDBLite consensus disorder prediction 361 375 - -
Vium7686g00007 658 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 657 - -
Vium7686g00007 658 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 570 658 IPR001179 GO:0003755
Vium7686g00007 658 MobiDBLite consensus disorder prediction 117 137 - -
Vium7686g00007 658 MobiDBLite consensus disorder prediction 411 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7686g00007 Vium-Chr7686 28699 36179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7686g00007 569 655 Calmodulin-binding Proteins AT5G48570 43.182 3.77e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7686g00007 K14826 - gmx:100798135 780.4