Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7686g00006 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTCACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTACTATCTCGCCACTGCCCCCAACGCCAATCTTATTGATGATTCTGAATCATTTGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGATGATAGTTTCATCGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCGCATGACAACGGACCAAAAATTAGGAAAGTCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAGTCCAGGAAACTGACAATGAAGATAGCCTCCCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAACGAAACGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAACAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGATGCTGGACATGTCCTTGTGGATAGTCAGACATATAGTAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTAAAAATGGAAGAGATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACAGATAAAATGCTGCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATAACAGTCTTGTTGATCTGCCTCTAAGAAATGAACAACACTCGGTTAATGAGGATGTTAAAATTTCAGGCAATGCTGCTGAGATGGATCCTAAAAAGAATAGAGCAAAAAGGAAAAAGAAAGAACAAGTAAACAAAAGTGACTATGGATATAATGAAGAAATCTTCCAAGAGGACAACAAGGCCAACAGAGATGCATCAGGGTCACAGAATGCGATTCATAAATTTTTTGAAGAAAAAGAGAAGCATCAGAAGCTAACTAATGAGAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACATTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCATGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTATCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGGCACTCTGACAAAATACCACCAAGTTCATGGTTGATTTATGACATTGAACTAATTAAAGTTCATTGA 1974 0.4073 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATAPNANLIDDSESFGEDIADTETERSDYSDEDGYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKVSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQVQETDNEDSLPISSIYKNKASGRVLDNETDVSVVRGAGDASNNNEEDGGNNIFETNLDAGHVLVDSQTYSREAVPSKHLVDPCTSLDVGDIKSPKKKKKKKEKEAKSSCNGRSIKLDNVINELKMEEMTQVIVAGGKQEQHVDDKETETTDKMLPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHNSLVDLPLRNEQHSVNEDVKISGNAAEMDPKKNRAKRKKKEQVNKSDYGYNEEIFQEDNKANRDASGSQNAIHKFFEEKEKHQKLTNEKMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVYVERSGETEMMEEDRSKGEDAKHSNVRTLKNGLVIHEQEKGKKDGKIAASGKKISIYYTGKLKENGAIFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPSSWLIYDIELIKVH 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7686g00006 657 MobiDBLite consensus disorder prediction 272 309 - -
Vium7686g00006 657 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vium7686g00006 657 Gene3D Nucleoplasmin core domain 1 98 - -
Vium7686g00006 657 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 565 654 IPR001179 GO:0003755
Vium7686g00006 657 MobiDBLite consensus disorder prediction 409 434 - -
Vium7686g00006 657 MobiDBLite consensus disorder prediction 411 434 - -
Vium7686g00006 657 MobiDBLite consensus disorder prediction 477 511 - -
Vium7686g00006 657 MobiDBLite consensus disorder prediction 335 375 - -
Vium7686g00006 657 SUPERFAMILY FKBP-like 505 656 - -
Vium7686g00006 657 MobiDBLite consensus disorder prediction 361 375 - -
Vium7686g00006 657 Gene3D - 519 657 IPR046357 GO:0003755
Vium7686g00006 657 MobiDBLite consensus disorder prediction 117 137 - -
Vium7686g00006 657 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 569 657 IPR001179 GO:0003755
Vium7686g00006 657 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7686g00006 Vium-Chr7686 28699 36179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7686g00006 568 654 Calmodulin-binding Proteins AT5G48570 43.182 3.96e-15 77.0