Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7686g00005 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTCACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTACTATCTCGCCACTGCCCCCAACGCCAATCTTATTGATGATTCTGAATCATTTGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGATGATAGTTTCATCGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCGCATGACAACGGACCAAAAATTAGGAAAGTCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAGTCCAGGAAACTGACAATGAAGATAGCCTCCCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAACGAAACGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAACAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGATGCTGGACATGTCCTTGTGGATAGTCAGACATATAGTAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTAAAAATGGAAGAGATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACAGATAAAATGCTGCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATAACAGTCTTGTTGATCTGCCTCTAAGAAATGAACAACACTCGGTTAATGAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACATTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCATGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTATCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGGCACTCTGACAAAATACCACCAAGTTCATGGTTGATTTATGACATTGAACTAATTAAAGTTCATTGA 1758 0.4141 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATAPNANLIDDSESFGEDIADTETERSDYSDEDGYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKVSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQVQETDNEDSLPISSIYKNKASGRVLDNETDVSVVRGAGDASNNNEEDGGNNIFETNLDAGHVLVDSQTYSREAVPSKHLVDPCTSLDVGDIKSPKKKKKKKEKEAKSSCNGRSIKLDNVINELKMEEMTQVIVAGGKQEQHVDDKETETTDKMLPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHNSLVDLPLRNEQHSVNEMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVYVERSGETEMMEEDRSKGEDAKHSNVRTLKNGLVIHEQEKGKKDGKIAASGKKISIYYTGKLKENGAIFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPSSWLIYDIELIKVH 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7686g00005 585 MobiDBLite consensus disorder prediction 272 309 - -
Vium7686g00005 585 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 493 582 IPR001179 GO:0003755
Vium7686g00005 585 Gene3D - 446 585 IPR046357 GO:0003755
Vium7686g00005 585 MobiDBLite consensus disorder prediction 407 439 - -
Vium7686g00005 585 MobiDBLite consensus disorder prediction 361 375 - -
Vium7686g00005 585 SUPERFAMILY FKBP-like 440 584 - -
Vium7686g00005 585 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vium7686g00005 585 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 497 585 IPR001179 GO:0003755
Vium7686g00005 585 MobiDBLite consensus disorder prediction 117 137 - -
Vium7686g00005 585 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 584 - -
Vium7686g00005 585 MobiDBLite consensus disorder prediction 335 375 - -
Vium7686g00005 585 Gene3D Nucleoplasmin core domain 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7686g00005 Vium-Chr7686 28699 36179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7686g00005 496 582 Calmodulin-binding Proteins AT5G48570 43.182 4.25e-15 76.6