Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7686g00004 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTCACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTACTATCTCGCCACTGCCCCCAACGCCAATCTTATTGATGATTCTGAATCATTTGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGATGATAGTTTCATCGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCGCATGACAACGGACCAAAAATTAGGAAAGTCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAGTCCAGGAAACTGACAATGAAGATAGCCTCCCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAACGAAACGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAACAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGATGCTGGACATGTCCTTGTGGATAGTCAGACATATAGTAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTAAAAATGGAAGAGATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACATTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCATGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTATCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGGCACTCTGACAAAATACCACCAAGTTCATGGTTGATTTATGACATTGAACTAATTAAAGTTCATTGA 1578 0.4157 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATAPNANLIDDSESFGEDIADTETERSDYSDEDGYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKVSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQVQETDNEDSLPISSIYKNKASGRVLDNETDVSVVRGAGDASNNNEEDGGNNIFETNLDAGHVLVDSQTYSREAVPSKHLVDPCTSLDVGDIKSPKKKKKKKEKEAKSSCNGRSIKLDNVINELKMEEMTQVIVAGGKQEQHVDDKMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVYVERSGETEMMEEDRSKGEDAKHSNVRTLKNGLVIHEQEKGKKDGKIAASGKKISIYYTGKLKENGAIFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPSSWLIYDIELIKVH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7686g00004 525 Gene3D - 388 525 IPR046357 GO:0003755
Vium7686g00004 525 MobiDBLite consensus disorder prediction 272 309 - -
Vium7686g00004 525 MobiDBLite consensus disorder prediction 346 379 - -
Vium7686g00004 525 SUPERFAMILY FKBP-like 379 524 - -
Vium7686g00004 525 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 433 522 IPR001179 GO:0003755
Vium7686g00004 525 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 524 - -
Vium7686g00004 525 Gene3D Nucleoplasmin core domain 1 98 - -
Vium7686g00004 525 MobiDBLite consensus disorder prediction 117 137 - -
Vium7686g00004 525 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vium7686g00004 525 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 437 525 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7686g00004 Vium-Chr7686 28699 36179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7686g00004 436 522 Calmodulin-binding Proteins AT5G48570 43.182 3.42e-15 76.6