Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium7686g00003 | ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTCACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTACTATCTCGCCACTGCCCCCAACGCCAATCTTATTGATGATTCTGAATCATTTGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGATGATAGTTTCATCGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCGCATGACAACGGACCAAAAATTAGGAAAGTCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAGTCCAGGAAACTGACAATGAAGATAGCCTCCCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAACGAAACGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAACAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGATGCTGGACATGTCCTTGTGGATAGTCAGACATATAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTAAAAATGGAAGAGATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACAGATAAAATGCTGCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATAACAGTCTTGTTGATCTGCCTCTAAGAAATGAACAACACTCGGTTAATGACAGGGATGTTAAAATTTCAGGCAATGCTGCTGAGATGGATCCTAAAAAGAATAGAGCAAAAAGGAAAAAGAAAGAACAAGTAAACAAAAGTGACTATGGATATAATGAAGAAATCTTCCAAGAGGACAACAAGGCCAACAGAGATGCATCAGGGTCACAGAATGCGATTCATAAATTTTTTGAAGAAAAAGAGAAGCATCAGAAGCTAACTAATGAGAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACATTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCATGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTATCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGGCACTCTGACAAAATACCACCAAGTTCATGGTTGATTTATGACATTGAACTAATTAAAGTTCATTGA | 1974 | 0.4078 | MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATAPNANLIDDSESFGEDIADTETERSDYSDEDGYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKVSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQVQETDNEDSLPISSIYKNKASGRVLDNETDVSVVRGAGDASNNNEEDGGNNIFETNLDAGHVLVDSQTYREAVPSKHLVDPCTSLDVGDIKSPKKKKKKKEKEAKSSCNGRSIKLDNVINELKMEEMTQVIVAGGKQEQHVDDKETETTDKMLPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHNSLVDLPLRNEQHSVNDRDVKISGNAAEMDPKKNRAKRKKKEQVNKSDYGYNEEIFQEDNKANRDASGSQNAIHKFFEEKEKHQKLTNEKMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVYVERSGETEMMEEDRSKGEDAKHSNVRTLKNGLVIHEQEKGKKDGKIAASGKKISIYYTGKLKENGAIFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPSSWLIYDIELIKVH | 657 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium7686g00003 | 657 | Pfam | Nucleoplasmin-like domain | 3 | 95 | IPR041232 | - | |
| Vium7686g00003 | 657 | MobiDBLite | consensus disorder prediction | 282 | 308 | - | - | |
| Vium7686g00003 | 657 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 565 | 654 | IPR001179 | GO:0003755 | |
| Vium7686g00003 | 657 | Gene3D | - | 519 | 657 | IPR046357 | GO:0003755 | |
| Vium7686g00003 | 657 | MobiDBLite | consensus disorder prediction | 334 | 374 | - | - | |
| Vium7686g00003 | 657 | MobiDBLite | consensus disorder prediction | 477 | 511 | - | - | |
| Vium7686g00003 | 657 | MobiDBLite | consensus disorder prediction | 360 | 374 | - | - | |
| Vium7686g00003 | 657 | SUPERFAMILY | FKBP-like | 505 | 656 | - | - | |
| Vium7686g00003 | 657 | Gene3D | Nucleoplasmin core domain | 1 | 98 | - | - | |
| Vium7686g00003 | 657 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 41 | 656 | - | - | |
| Vium7686g00003 | 657 | MobiDBLite | consensus disorder prediction | 410 | 432 | - | - | |
| Vium7686g00003 | 657 | MobiDBLite | consensus disorder prediction | 117 | 137 | - | - | |
| Vium7686g00003 | 657 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 569 | 657 | IPR001179 | GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium7686g00003 | Vium-Chr7686 | 28699 | 36179 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium7686g00003 | 568 | 654 | Calmodulin-binding Proteins | AT5G48570 | 43.182 | 3.99e-15 | 77.0 |