Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7676g00013 ATGGAGAAACTCAAAGTGTCCACAAAGCATGATTCTGATGGCAGCAGTGATCAGGCAGATTCATTTCCAATATTCGAATTGCGCGAGAGTCAAAATGTTGGACAGCAGAGGTATAGAAGAGAGGAAGATGATACAAAAGCTGTGAGATTCGATGGAGCTTCTGCAATTGCTTCCTCTAATTCTGCAAGCAATAAGGAATCTGCCAACAAGTGGATGGCATTTGCTAGGGACCCTGGTTCTGCAGTTGATAGCAACTCAGCAGTAAATGATAAAAGTACCACTGAAGACAATTACTTAAGGAATCATCTGAGTGACAAGTCTTCTTCTGATCAACAAGTTTTAACTGAAGCAACCATAGCTGAGAGAACTGCAGAATGGGGTCTTGTAGTGAACTCTGGGAACTTCAAAACCAGTTCTTCTTTCGATGGTGACAGAACCAGAAACTTGTCAGATAGATTTGTTGAATCAACAAGGACATCTGGGGATTCAAATTTTGGATCTGAGTCATCATCAGGGGTTTTAAGGGTGTCACAAGAGTTGAAGGATGCATTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACTAAACCAGACTGCCCAATTATGTATGCCAGTAGTGGCTTTTTCACTATGACTGGCTATTCTTCAAAGGAGATTATTGGAAGGAATTGTCGGTTTCTTCAGGGGGCTGATACAGACAAGAATGAAGTGGCCAAAATTCGGGATGCTATTAGAAACGGAAGAAGTTATTGTGGCAGATTATTAAACTACAAGAAAAATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCAATCAAAGATAACCAAGGCAATACTATCAAATTCATCGGAATGCAGGTTGAGGTGAGCAAGTACACTGAAGGAGTGAATGAAAAGGCGTTACGACCAAATGGATTACCAAAGTCATTAATTCGATATGATGCTCGTCAAAAGGAAAAAGCTTTGGGTTCCATCACCGAGGTTGTCCAAACTGTTAAGGACCCAAAATCTATTATTAAAAATAGGAGTGATGATAATGCCTCCATGCAAGAAGTGGAACAGAAAATGAATCTTGATTTTGCTTTGCCAAAGTCTGCTGTTGCTGGGAATACAAGCACACCTGGTAGACAACCTTCTCCACTTAACATCCAACGAGTGAGTTCTAATCAGGAAAAGGTCAGAACATCACGATCAGGACGGATTTCTTTCAAGGGTTTTAAAGGGAAATCTCAGAGTTATAGTGGGAGAGATGAGGAGAAGTACACTGTTGAACCTGAGATTTTGATGACCAAAGAAATAGAGTGGTCGAACAATTTGGAGAACTCACTAAGAGAGAGAGACATGAGGCAAGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAACTTCGTGATTTCTGATCCTAGACTGCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAGCTTACGGAATACACACGAGAAGAAATTCTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAGTTTTGGAATTTGTTTCACTTGCAACCCATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGCGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCTACAGAGTGCTAAGTTGGTGAAAGCCACTGCAGAAAATGTGGATGAAGCTGTCCGAGAACTTCCCGATGCCAACTTGAGGCCAGAAGATTTGTGGGCAATTCATTCCCAACCTGTATATCCACGACCTCACAGAAAGGATAATCCTTCTTGGATAGCAATACAAAAGGTTACTGCAAGAGGCGAAAAAATTAGTCTGAAACATTTTGTGCCCATAAGGCCACTAGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGCACTGGTGAACTATATGCAATGAAAGCAATGGAAAAGTCTGTCATGCTAAATCGTAATAAGGTTCACCGATCATGCATTGAGAGAGAGATTATATCATTATTGGATCACCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTTCTGACTTCTGCCACGGGGGAGAATTGTTTGCATTGCTTGACAAACAACCAATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTTTCTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAACTGATTTTGATCTATCATCTATGACATCGTGTAAACCCCAGGTTGTGAAGCAAGCATTACCTGGTAAAAGAAGAAAATCACGAAGTGAACCTCCACCAATACTTGTTGCAGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTGCCCCTGAAATTATAACTGGAGCTGGGCATACCAGCGCTATAGATTGGTGGACTCTTGGTATCTTATTGTATGAGATGCTGTATGGTCGCACACCATTTAGAGGAAAGAATAGACAGAGGACATTTTCCAACATCTTACACAAGGATCTTACCTTCCCAAGCAGCATCCCGGCCAGTCTTGCGGCCAGGCAGTTGATTAATGCATTACTGCAGAGAGATCCAACAAGTCGTCTAGGTTCAACCACTGGTGCAAATGAAATCAAACAACACCCTTTTTTCCGTGGAATCAATTGGCCTCTAATCCGCAACATGAGTCCACCTCCATTAGATGTTCCTCTAAAATTGATAGGAAAGGATCCAGTGGCGAAGGATATAAATTGGGAAGATGATGGAGTGCTAGTTAGCTCCATTGATATGGATATTTTTTGA 2973 0.4117 MEKLKVSTKHDSDGSSDQADSFPIFELRESQNVGQQRYRREEDDTKAVRFDGASAIASSNSASNKESANKWMAFARDPGSAVDSNSAVNDKSTTEDNYLRNHLSDKSSSDQQVLTEATIAERTAEWGLVVNSGNFKTSSSFDGDRTRNLSDRFVESTRTSGDSNFGSESSSGVLRVSQELKDALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGADTDKNEVAKIRDAIRNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDNQGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIIKNRSDDNASMQEVEQKMNLDFALPKSAVAGNTSTPGRQPSPLNIQRVSSNQEKVRTSRSGRISFKGFKGKSQSYSGRDEEKYTVEPEILMTKEIEWSNNLENSLRERDMRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVYPRPHRKDNPSWIAIQKVTARGEKISLKHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTSTHVCLISDFCHGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHFLGIIYRDLKPENILLQKDGHVVLTDFDLSSMTSCKPQVVKQALPGKRRKSRSEPPPILVAEPITQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQRTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRLGSTTGANEIKQHPFFRGINWPLIRNMSPPPLDVPLKLIGKDPVAKDINWEDDGVLVSSIDMDIF 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7676g00013 990 ProSiteProfiles PAS repeat profile. 453 526 IPR000014 -
Vium7676g00013 990 SMART serkin_6 654 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7676g00013 990 ProSiteProfiles Protein kinase domain profile. 654 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7676g00013 990 Pfam PAS domain 197 293 IPR000014 -
Vium7676g00013 990 Pfam PAS domain 476 568 IPR000014 -
Vium7676g00013 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 472 568 IPR035965 -
Vium7676g00013 990 FunFam LOV domain-containing protein 442 606 - -
Vium7676g00013 990 CDD PAS 476 568 IPR000014 -
Vium7676g00013 990 ProSitePatterns Protein kinases ATP-binding region signature. 660 683 IPR017441 GO:0005524
Vium7676g00013 990 Gene3D PAS domain 442 606 - -
Vium7676g00013 990 PANTHER FLIPPASE KINASE 1-RELATED 125 957 - -
Vium7676g00013 990 Pfam Protein kinase domain 657 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7676g00013 990 Gene3D Phosphorylase Kinase; domain 1 653 737 - -
Vium7676g00013 990 SUPERFAMILY Protein kinase-like (PK-like) 628 967 IPR011009 -
Vium7676g00013 990 SMART pac_2 530 572 IPR001610 -
Vium7676g00013 990 SMART pac_2 253 295 IPR001610 -
Vium7676g00013 990 FunFam Putative LOV domain-containing protein 738 953 - -
Vium7676g00013 990 Gene3D PAS domain 190 362 - -
Vium7676g00013 990 MobiDBLite consensus disorder prediction 1 16 - -
Vium7676g00013 990 Gene3D Transferase(Phosphotransferase) domain 1 738 956 - -
Vium7676g00013 990 CDD PAS 203 292 IPR000014 -
Vium7676g00013 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 197 289 IPR035965 -
Vium7676g00013 990 ProSiteProfiles PAC domain profile. 527 581 IPR000700 -
Vium7676g00013 990 CDD STKc_phototropin_like 652 964 - -
Vium7676g00013 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 775 787 IPR008271 GO:0004672|GO:0006468
Vium7676g00013 990 SMART pas_2 455 524 IPR000014 -
Vium7676g00013 990 SMART pas_2 178 247 IPR000014 -
Vium7676g00013 990 FunFam Putative LOV domain-containing protein 190 346 - -
Vium7676g00013 990 NCBIfam PAS domain S-box protein 479 570 IPR000014 -
Vium7676g00013 990 NCBIfam PAS domain S-box protein 203 293 IPR000014 -
Vium7676g00013 990 ProSiteProfiles PAS repeat profile. 176 249 IPR000014 -
Vium7676g00013 990 ProSiteProfiles PAC domain profile. 250 304 IPR000700 -
Vium7676g00013 990 FunFam LOV domain-containing protein 653 737 - -
Vium7676g00013 990 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7676g00013 Vium-Chr7676 71440 83290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7676g00013 117 989 AGC Kinase Gene Family AT5G58140 74.179 0.0 1306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium7676g00013 Pkinase 6.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7676g00013 K20715 - gmx:100820096 1715.66