Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7676g00010 ATGGCTACACTGCTGAGAAAACTGTGCGAATCCGCGTCGCTGAAGCGATCGGGTTCCAATCCGAACCCGAATCCGAACCCATCATCGGAACGCGCGCCATCTCCTCTGGGCGCCTTCGACACTCTCCCTGCCGACATACTCATGCAAATCGTGCGACTCGTGGGCCCCAAACACGCCGCCAGACTCAGCCTCCTCAGCAAGTCGTGGCGATCCCTTGTCTCCGACAACGACCTCTGGGTGCACTTCCTCCACACCCACCACCCTCCCTCGGCGCTCTTCGCGGAAACCGCTCTCAGCTCCGGCTACCCTCTTCCGACCTTATCTGCTCAGAGCTCACCACGTGGCTCTCTCCAGCATGTTTATGCCCTCCGTGAACGCCTCCCTTCGTCCGTTGTTATCGACGGGGGCTCTGGCTATTGCAAATTCGGTTGGAGCAAAGGCTCTTCTCCTTCTGGGCGATTCGCGACCTTTCTGGAATTCGGTAACGTTGAAACGCCCATGTACACTAGACTTCGACATTTTTTCGGGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCAGCTGTTGTTTCTATACCAATTTGTCACTATGATGATACTGAATCAGCCAAGGCATCAAGACAGCAGCTTAAAGAAGCAATCTATGCTGCTCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTTCAAAACAAACTTCTGGGATTGCTGTTAATATAGGCTTTCAAGTGACATCCATTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAAGTGGGCGTGGAAGTTGTGGGGCTGGGAGCACTAAAGCTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTTTATACACTGTCCGCACTCTGAAAGAGAAGTTATGTTATGTTGCTGCTGACTATGAAGCTGAGCTATTGAAAGATACAGAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGGGAGATATTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCATCAGGCCGTCGCACTTTGTATGGATCACTGCTATTCTGCAGAATTAGCAGTTAACAACGATTGGTACAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGGTTAG 1212 0.4884 MATLLRKLCESASLKRSGSNPNPNPNPSSERAPSPLGAFDTLPADILMQIVRLVGPKHAARLSLLSKSWRSLVSDNDLWVHFLHTHHPPSALFAETALSSGYPLPTLSAQSSPRGSLQHVYALRERLPSSVVIDGGSGYCKFGWSKGSSPSGRFATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQPAVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQGTLALYASKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEKLCYVAADYEAELLKDTEASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAVALCMDHCYSAELAVNNDWYKTVVLSGGTACLPGLAG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7676g00010 403 Gene3D Actin; Chain A, domain 4 280 357 - -
Vium7676g00010 403 Gene3D - 37 82 - -
Vium7676g00010 403 Pfam Actin 179 401 IPR004000 -
Vium7676g00010 403 Gene3D - 247 402 - -
Vium7676g00010 403 SMART actin_3 128 403 IPR004000 -
Vium7676g00010 403 SUPERFAMILY Actin-like ATPase domain 130 250 IPR043129 -
Vium7676g00010 403 MobiDBLite consensus disorder prediction 12 35 - -
Vium7676g00010 403 SUPERFAMILY F-box domain 25 104 IPR036047 GO:0005515
Vium7676g00010 403 PANTHER ACTIN 172 402 IPR004000 -
Vium7676g00010 403 Pfam F-box domain 40 80 IPR001810 GO:0005515
Vium7676g00010 403 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Vium7676g00010 403 CDD NBD_sugar-kinase_HSP70_actin 131 275 - -
Vium7676g00010 403 SUPERFAMILY Actin-like ATPase domain 245 402 IPR043129 -
Vium7676g00010 403 Gene3D - 127 244 - -
Vium7676g00010 403 SMART fbox_2 42 82 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7676g00010 Vium-Chr7676 53781 63480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7676g00010 177 402 Cytoskeleton Gene Families AT3G12110 33.051 3.73e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7676g00010 K16616 - gmx:100804254 712.22