Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7676g00006 ATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGACGGTCGTAATGCAGAACATTCTGCTCAGCCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCCGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGGAACTGTGGCTTTGTAGCTTTCATGAACAGGGCTGATGGACAGGCAGCAAAAGACGAGATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATATTGTCTGGTCCTTCAGGTCCACCATTAACATCCGTACCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAGCATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAGGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTAGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGCGGAAGATGGATTCCTCCCTCATTACCAACGTCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTACCGTAGCATAATGGGGCGTATTACAGCTGAAGCCCTAAAGGAGCGTGTGCTGAAAGTTTTGCAAGTTTGGGCAGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCTATATGTGGCGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCGGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCTCACAACCAAGTGAGTTCTGGGAAGTATTCAAGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGCAGGACTTTCTTCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCTGTATCTTTAGCTTCTACACTTCCTATTCAACAACCTGAACTTAAGGCATTCACAAAAAAGGAAAAGAGTGATCCAGTTCTGCCAGCCTCAAAATGGGCTCGGGAGGATGATGAGAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTAAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGTAAACTGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATACAGGAAGAACTACAGAGAAGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGGGAACATGATTTAGAAAGGGATCGAGACAGACAAAAGGAAAGAAGTTATGATTTTGATATTGAAAGAGGAAAGGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGACGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2640 0.4383 MATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRNAEHSAQPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRQETSAEPEPAGLSSWNHYGDEDLPSQSRSSVSLASTLPIQQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKLLQAEYGLSDSGEDGKSNTGRTTEKRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQKERSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7676g00006 879 SUPERFAMILY Surp module (SWAP domain) 215 296 IPR035967 GO:0003723|GO:0006396
Vium7676g00006 879 SMART surpneu2 239 293 IPR000061 GO:0003723|GO:0006396
Vium7676g00006 879 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 166 IPR000504 GO:0003723
Vium7676g00006 879 CDD RRM_SR140 91 174 IPR035009 -
Vium7676g00006 879 SUPERFAMILY ENTH/VHS domain 353 490 IPR008942 -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 597 730 - -
Vium7676g00006 879 Coils Coil 354 374 - -
Vium7676g00006 879 ProSiteProfiles SAP motif profile. 543 577 IPR003034 -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 597 617 - -
Vium7676g00006 879 Pfam Surp module 239 291 IPR000061 GO:0003723|GO:0006396
Vium7676g00006 879 SMART rrm1_1 93 169 IPR000504 GO:0003723
Vium7676g00006 879 MobiDBLite consensus disorder prediction 652 684 - -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 316 349 - -
Vium7676g00006 879 Gene3D Surp module 227 296 IPR035967 GO:0003723|GO:0006396
Vium7676g00006 879 ProSiteProfiles SURP motif repeat profile. 241 284 IPR000061 GO:0003723|GO:0006396
Vium7676g00006 879 PANTHER RNA PROCESSING PROTEIN LD23810P 9 811 - -
Vium7676g00006 879 Coils Coil 726 746 - -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 803 872 - -
Vium7676g00006 879 Gene3D - 725 776 - -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 323 349 - -
Vium7676g00006 879 SMART cwf21_2 725 774 IPR013170 -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 626 649 - -
Vium7676g00006 879 Pfam cwf21 domain 726 772 IPR013170 -
Vium7676g00006 879 Pfam CID domain 356 484 IPR006569 -
Vium7676g00006 879 CDD cwf21_RRC1-like 725 774 IPR047491 -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 1 90 - -
Vium7676g00006 879 Gene3D - 349 495 IPR008942 -
Vium7676g00006 879 MobiDBLite consensus disorder prediction 770 879 - -
Vium7676g00006 879 SMART 558neu5 356 491 IPR006569 -
Vium7676g00006 879 Gene3D - 2 175 IPR012677 -
Vium7676g00006 879 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 173 IPR000504 GO:0003723
Vium7676g00006 879 MobiDBLite consensus disorder prediction 1 75 - -
Vium7676g00006 879 SUPERFAMILY RNA-binding domain, RBD 85 181 IPR035979 GO:0003676
Vium7676g00006 879 ProSiteProfiles CID domain profile. 349 494 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7676g00006 Vium-Chr7676 15817 32365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7676g00006 89 169 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.57e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7676g00006 K12842 - gmx:100776093 1534.24