Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7676g00004 ATGAGTTCATTCTCCATCACACGGAAAAAAACGCCATTCCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAGGATGAGACTGCTCGCTTGTATGCTGAGTTTGTAGAGTCATTTCAAGGAGACACTACTCCGGGGTCAAAAACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTTAAAGATGACTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGACGGTCGTAATGCAGAACATTCTGCTCAGCCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCCGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGGAACTGTGGCTTTGTAGCTTTCATGAACAGGGCTGATGGACAGGCAGCAAAAGACGAGATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATATTGTCTGGTCCTTCAGGTCCACCATTAACATCCGTACCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAGCATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAGGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTAGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGCGGAAGATGGATTCCTCCCTCATTACCAACGTCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTACCGTAGCATAATGGGGCGTATTACAGCTGAAGCCCTAAAGGAGCGTGTGCTGAAAGTTTTGCAAGTTTGGGCAGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCTATATGTGGCGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCGGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCTCACAACCAAGTGAGTTCTGGGAAGTATTCAAGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGCAGGACTTTCTTCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCTGTATCTTTAGCTTCTACACTTCCTATTCAACAACCTGAACTTAAGGCATTCACAAAAAAGGAAAAGAGTGATCCAGTTCTGCCAGCCTCAAAATGGGCTCGGGAGGATGATGAGAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTAAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGTAAACTGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATAGAAGAACTACAGAGAAGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGGGAACATGATTTAGAAAGGGATCGAGACAGACAAAAGGAAAGAAGTTATGATTTTGATATTGAAAGAGGAAAGGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGACGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2922 0.437 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDSEGEKSKDGVSVPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRNAEHSAQPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRQETSAEPEPAGLSSWNHYGDEDLPSQSRSSVSLASTLPIQQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKLLQAEYGLSDSGEDGKSNRRTTEKRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQKERSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7676g00004 973 CDD cwf21_RRC1-like 820 869 IPR047491 -
Vium7676g00004 973 Pfam CID domain 451 579 IPR006569 -
Vium7676g00004 973 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Vium7676g00004 973 MobiDBLite consensus disorder prediction 747 779 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 692 712 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 11 35 - -
Vium7676g00004 973 SMART cwf21_2 820 869 IPR013170 -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 692 825 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 411 444 - -
Vium7676g00004 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 268 IPR000504 GO:0003723
Vium7676g00004 973 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Vium7676g00004 973 Pfam Surp module 334 386 IPR000061 GO:0003723|GO:0006396
Vium7676g00004 973 SUPERFAMILY RNA-binding domain, RBD 180 275 IPR035979 GO:0003676
Vium7676g00004 973 MobiDBLite consensus disorder prediction 865 973 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 43 57 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 418 444 - -
Vium7676g00004 973 SMART 558neu5 451 586 IPR006569 -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 897 966 - -
Vium7676g00004 973 Coils Coil 821 841 - -
Vium7676g00004 973 Gene3D - 96 270 IPR012677 -
Vium7676g00004 973 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Vium7676g00004 973 Gene3D - 444 590 IPR008942 -
Vium7676g00004 973 Pfam cwf21 domain 821 867 IPR013170 -
Vium7676g00004 973 Coils Coil 17 37 - -
Vium7676g00004 973 PANTHER RNA PROCESSING PROTEIN LD23810P 1 905 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 61 80 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 874 890 - -
Vium7676g00004 973 CDD RRM_SR140 186 269 IPR035009 -
Vium7676g00004 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 261 IPR000504 GO:0003723
Vium7676g00004 973 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Vium7676g00004 973 MobiDBLite consensus disorder prediction 99 170 - -
Vium7676g00004 973 MobiDBLite consensus disorder prediction 721 744 - -
Vium7676g00004 973 Coils Coil 449 469 - -
Vium7676g00004 973 ProSiteProfiles SAP motif profile. 638 672 IPR003034 -
Vium7676g00004 973 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Vium7676g00004 973 SMART rrm1_1 188 264 IPR000504 GO:0003723
Vium7676g00004 973 MobiDBLite consensus disorder prediction 1 183 - -
Vium7676g00004 973 Gene3D - 820 871 - -
Vium7676g00004 973 SUPERFAMILY ENTH/VHS domain 448 585 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7676g00004 Vium-Chr7676 15817 33433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7676g00004 184 264 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.23e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7676g00004 K12842 - gmx:100776093 1719.52