Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7676g00002 ATGAGTTCATTCTCCATCACACGGAAAAAAACGCCATTCCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAGGATGAGACTGCTCGCTTGTATGCTGAGTTTGTAGAGTCATTTCAAGGAGACACTACTCCGGGGTCAAAAACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTTAAAGATGACTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGACGGTCGTAATGCAGAACATTCTGCTCCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCCGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGGAACTGTGGCTTTGTAGCTTTCATGAACAGGGCTGATGGACAGGCAGCAAAAGACGAGATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATATTGTCTGGTCCTTCAGGTCCACCATTAACATCCGTACCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAGCATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAGGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTAGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGCGGAAGATGGATTCCTCCCTCATTACCAACGTCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTACCGTAGCATAATGGGGCGTATTACAGCTGAAGCCCTAAAGGAGCGTGTGCTGAAAGTTTTGCAAGTTTGGGCAGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCTATATGTGGCGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCGGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCTCACAACCAAGTGAGTTCTGGGAAGTATTCAAGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGCAGGACTTTCTTCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCTGTATCTTTAGCTTCTACACTTCCTATTCAACAACCTGAACTTAAGGCATTCACAAAAAAGGAAAAGAGTGATCCAGTTCTGCCAGCCTCAAAATGGGCTCGGGAGGATGATGAGAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTAAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGTAAACTGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATACAGGAAGAACTACAGAGAAGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGGGAACATGATTTAGAAAGGGATCGAGACAGACAAAAGGAAAGAAGTTATGATTTTGATATTGAAAGAGGAAAGGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGACGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2922 0.437 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDSEGEKSKDGVSVPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRNAEHSAPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRQETSAEPEPAGLSSWNHYGDEDLPSQSRSSVSLASTLPIQQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKLLQAEYGLSDSGEDGKSNTGRTTEKRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQKERSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7676g00002 973 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Vium7676g00002 973 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Vium7676g00002 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Vium7676g00002 973 MobiDBLite consensus disorder prediction 1 182 - -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 720 743 - -
Vium7676g00002 973 Coils Coil 820 840 - -
Vium7676g00002 973 Pfam cwf21 domain 820 866 IPR013170 -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 11 35 - -
Vium7676g00002 973 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Vium7676g00002 973 CDD RRM_SR140 185 268 IPR035009 -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 43 57 - -
Vium7676g00002 973 Coils Coil 448 468 - -
Vium7676g00002 973 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Vium7676g00002 973 MobiDBLite consensus disorder prediction 897 966 - -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 746 778 - -
Vium7676g00002 973 Gene3D - 819 870 - -
Vium7676g00002 973 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Vium7676g00002 973 MobiDBLite consensus disorder prediction 691 711 - -
Vium7676g00002 973 Coils Coil 17 37 - -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 61 80 - -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 410 443 - -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 691 824 - -
Vium7676g00002 973 Gene3D - 96 269 IPR012677 -
Vium7676g00002 973 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Vium7676g00002 973 PANTHER RNA PROCESSING PROTEIN LD23810P 1 905 - -
Vium7676g00002 973 SMART rrm1_1 187 263 IPR000504 GO:0003723
Vium7676g00002 973 SMART 558neu5 450 585 IPR006569 -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 864 973 - -
Vium7676g00002 973 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 417 443 - -
Vium7676g00002 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Vium7676g00002 973 CDD cwf21_RRC1-like 819 868 IPR047491 -
Vium7676g00002 973 Pfam CID domain 450 578 IPR006569 -
Vium7676g00002 973 Gene3D - 443 589 IPR008942 -
Vium7676g00002 973 SMART cwf21_2 819 868 IPR013170 -
Vium7676g00002 973 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Vium7676g00002 973 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Vium7676g00002 973 MobiDBLite consensus disorder prediction 99 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7676g00002 Vium-Chr7676 15817 33433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7676g00002 186 255 Eukaryotic Initiation Factors Gene Family AT3G16380 38.571 3.48e-06 48.9