Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7672g00003 ATGGGTACGATGCTACAAACCATTCTGACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCATCATCTTCCTCTTCTTTCTGTTCAAACCATGGCGCTTCTTTTTCTCTCAGCGTTTCCTTTCTTCTATAAAGGGCGAGCTGGAGCACCCCCTTGTTACCGATGAAGAGGATGCAAATGCGTCGCCGTTAAATCAGATCAATGAATTGCCTCGAGATTATGATCTCGAGGGTGCATGTTATCCCACTGAAGCTCATTTTCGCTCTCCTCGGACCCATGGCCAAGGGCTTGTTCATAAGCAAAGGGTTCAAAACCTTTCTGTTCCACCTACTATACACCTGAGTGGTGATGCTTTGGTCGTGGATGTGATCTCTGATCCTTCCTCTGACGATGTTGATGTTGGTCAAACCCTTAGGCTTTCCACAGCTCAATTAGCACAGTTTCAAAAGCAGGGAACTCCCAATTTTCGAAATGATAGACTGCAGGACTTAGTGCAATGGAATATCTCCGATCAAAGAAGTTGTCTCACTCTGGAGGTTATCAGTGGCCCTTCTCGAGGACTTCGTTGTTCTGTACAGTCGATCAATTCCTCTCGTCTACCGCTAACCTTGGGAAGAGTCTCTCCGAGTGATTTGTTGATAAAAGATTCAGAAGTGTCAGGAAAGCACGCTATGATAAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGACATGGGTAGTCTGAATGGAACACTATTGAACTCTAAGCCAATCAACCACCCAGACACTGAAAGTAGGAATTGGGGAAATCCAATGAGTCTTGCTAATGGAGATATCATAACACTTGGGACAACATCAAAAGTAATGGTCCATATTACATCCCAAACTCAGCATCACATTCCCTTTGGAGTTGGCATGGCATCAGATCCAATGGCTATGCGTAGAGGAGGAAAAAGGTTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTGAATCAGTTTGGACTTTTTGGCGTTTGTGATGGTCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGGTAATTTCTAGTATATTATCGGATTCATCAAGGAGGGAGAGAGTTTTGTCACTCGGTGATGCTTCAGATGTTCTTCGAGATGCATTTTCTCAAACGGAAGATCATATGAATCACCATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGAAGAAAATTTCTTTGCACAATGTGCTAATGTGGGGGACTCCACCTGTATTATGAGTTTGAATGGGAAGCAAATCAAGATGACAGAAGATCACAAGATAACGAATTATTCAGAAAGACTCAGAATCGAAGAGACAGGCGAACCCTTAAAAGAAGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATACCCGGTTCAGTTCAGAACCTTACATAAGTGAAGTTGTGCACATTGATCAAGCAAGCAAAGCTTTTGCTATTCTAGCTAGTGATGGGCTGTGGGATGTCATCAGCGTGAAGAAGGCAATACAGCTTGTGTTGCAGATGAAGGAGAAATGTTATTCAGAGAGAGAGAATATAGCAGAAAAAGCTGCAAGCTTGTTGTTGAATGAGGCTAAAACGCTCAGAACAAAGGATAATACGTGTGTAATTTTCTTAGATTTTGATATCTTCAACAAATTCTCTTGTAAAGTTGAATCCTAG 1746 0.4278 MGTMLQTILTVLLLLMLLLIIIFLFFLFKPWRFFFSQRFLSSIKGELEHPLVTDEEDANASPLNQINELPRDYDLEGACYPTEAHFRSPRTHGQGLVHKQRVQNLSVPPTIHLSGDALVVDVISDPSSDDVDVGQTLRLSTAQLAQFQKQGTPNFRNDRLQDLVQWNISDQRSCLTLEVISGPSRGLRCSVQSINSSRLPLTLGRVSPSDLLIKDSEVSGKHAMIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDTESRNWGNPMSLANGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMAMRRGGKRFPMEDVCYYQWPLPGLNQFGLFGVCDGHGGDGAAKSASKLFPEVISSILSDSSRRERVLSLGDASDVLRDAFSQTEDHMNHHYEGCTATVLLVWTDGEENFFAQCANVGDSTCIMSLNGKQIKMTEDHKITNYSERLRIEETGEPLKEGETRLYGINLARMLGDKFLKQQDTRFSSEPYISEVVHIDQASKAFAILASDGLWDVISVKKAIQLVLQMKEKCYSERENIAEKAASLLLNEAKTLRTKDNTCVIFLDFDIFNKFSCKVES 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7672g00003 581 CDD PP2Cc 305 569 IPR001932 -
Vium7672g00003 581 Gene3D - 305 576 IPR036457 -
Vium7672g00003 581 SUPERFAMILY PP2C-like 310 570 IPR036457 -
Vium7672g00003 581 CDD FHA_PP2C70-like 175 285 - -
Vium7672g00003 581 ProSiteProfiles Forkhead-associated (FHA) domain profile. 201 252 IPR000253 GO:0005515
Vium7672g00003 581 PANTHER PROTEIN PHOSPHATASE 2C 285 565 IPR015655 GO:0004722|GO:0006470
Vium7672g00003 581 Pfam Protein phosphatase 2C 304 562 IPR001932 -
Vium7672g00003 581 SMART FHA_2 200 252 IPR000253 GO:0005515
Vium7672g00003 581 Pfam FHA domain 202 277 IPR000253 GO:0005515
Vium7672g00003 581 Gene3D - 169 304 - -
Vium7672g00003 581 ProSiteProfiles PPM-type phosphatase domain profile. 297 569 IPR001932 -
Vium7672g00003 581 ProSitePatterns PPM-type phosphatase domain signature. 334 342 IPR000222 GO:0043169
Vium7672g00003 581 SUPERFAMILY SMAD/FHA domain 173 284 IPR008984 GO:0005515
Vium7672g00003 581 FunFam Protein phosphatase 2C 70 305 576 - -
Vium7672g00003 581 FunFam Protein phosphatase 2C 70 170 304 - -
Vium7672g00003 581 SMART PP2C_4 291 567 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7672g00003 Vium-Chr7672 43157 51176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7672g00003 1 570 PP2C-type Phosphatase Gene Family AT5G19280 57.262 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7672g00003 K01090 - gmx:100170642 942.184