Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7670g00001 ATGGCTGATCCTCAGAAAACTGCTCTTGGCGAGAGAGATATCGAGCAGGCACTTACATTTCTTAAGAAAGGCTCGTATCTTCTAAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTGTTATGGTACTCTGGCAAGGAAGAGAAACAGCTTAAGCTTGGTACAGTTTCAAGGATCATTCCAGGGCAGAGAACTGCAACATTTCAGCGGTATCCACGACCTGAGAAGGAATATCAATCATTTTCTCTTATATACAATGACAGATCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTATTGGTCTTAAGGCATTAGTTACTCGAGGGAACAGTCACAAGTGGAGATTTGAGTCAAGAACTGATGACAGTCAGTGTTCTGATAGTCCAAAATCTAGCACACGAAAATCCACTCCTTCAAATACACCATTTTCTGACCCTGGAGATGGCGGTGGAGCTGCTTTTGATGTGAAAAATAGATGGGTTAAGGCTTTCTCTGAAATAATTTCGTTCAATGCAGCTAGCAAGGGTTCCAGTCAAGCTGAATCTATTGCAAATTCCTCTTTATCCTCTGGATCTGCAGATAACTCAAGCAATCGAAATTCTTCATCTGAGGCATTTCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGTCAGGGTTCTTATCATGAAGATTTTGATTCCCTAAGTGATATTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTGTCTAGTTCTGAGATGGATGCTTTCCTCCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCAAAGTATTAGTTGTGGCTACAGACATGCTGTTCTGGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTCATCACCCTAAACTTGTTGAAGCTCTTGGTGGCTTGAATATTGAGTTAGTAGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGACATGGAATTGAAGCCACTCACTGGATTCCTAAGAAAGTAAGTGGTAATTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAATTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGACACGGAAATCATAGTAGTGCAACTATTCCTCAGGAAGTGGAAACTTTGAGAGGGTTTAGAACAACCAGGGTTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTGGAGGTGATAACCGAGTCTGTGGAATCTTCTACAAGCTCATCTTGTAAAAGACTGTACACGTGGGGTGATGGAGACAAAGGCCAACTTGGACATGCTGATAAGAAACCTAGACTAGTTCCTGAGTGTGTAATTGCATTGAGTACTGAAAACATTAGCCAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACGTGTATATACAGTAGGAAGCACTGCTTATGGGCAACTTGGCTGTCCTGCATCCGATGGAAAAGTCCCTACATGTGTTAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACCCTTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAATTCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAATTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAATCTTTAAAAGCTTCCCTTGCTCCCAATGCTAGTAAGCTGTATCGAGTTTGTGAGGACTGTTATCTCAAACTTAAAAAATCTTCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGAGAACAGAACCACTAAAATACAGGGAACACTATTGAGGCTTTCATCTTTTGGTTCTATTCTTCATACAGTAAGTGGTCAATCGAAGCTTCCAGATTCACAAGATATTCATCGTTCCCCGGCTTCAAATGGAAAATTAGAGATGAGGGGTTTTGCTTCTTCAAAATCATCAAATTCTGTTTTTGTGGATTCTAAGAAACACATTTCATTTTCTGAGCCTGCTGCAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCAAAGTCAAGTCCAAGAGAATTGTATGAAGATATAAATGATGATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACTCAGGTTGAAGATCTTACTCGAAAATCGAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTACAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGTTAAAGGAAATGGTGGAAAGGCTGCCAGAAGGACACAATGCTGACTCCAGTACAGAGCTCTGTGCTGAAACCACTAAAAATATTCTAGATCATTCCTTGGATGTGAGCCATATAAGAAACACTATCATGCTAAAAAATGAAGGCAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTTCGTAAGTTTGTCTCCCCAGCCAGGTGGTGGTAATGAGCTTAAGCGCGTTCGCTTCAGTCGAAAGCATTTTACAGAAGAAGAAGCTGAGAAGTGGTGGACGGAAAATGGAAGCAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 3045 0.4099 MADPQKTALGERDIEQALTFLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLGTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFIGLKALVTRGNSHKWRFESRTDDSQCSDSPKSSTRKSTPSNTPFSDPGDGGGAAFDVKNRWVKAFSEIISFNAASKGSSQAESIANSSLSSGSADNSSNRNSSSEAFRVSLSSAVSSSSQGSYHEDFDSLSDIFIWGEGIGNGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVQSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVHHPKLVEALGGLNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGIEATHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNHSSATIPQEVETLRGFRTTRVACGVWHTAAVVEVITESVESSTSSSCKRLYTWGDGDKGQLGHADKKPRLVPECVIALSTENISQVACGHSLTIALTTSGRVYTVGSTAYGQLGCPASDGKVPTCVKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTLAVCLHKWIPSVDHSTCFGCRNSFNFRRKRHNCYNCGLVFCKSCTSKKSLKASLAPNASKLYRVCEDCYLKLKKSSESVPLVQTPSLRSVSLQENRTTKIQGTLLRLSSFGSILHTVSGQSKLPDSQDIHRSPASNGKLEMRGFASSKSSNSVFVDSKKHISFSEPAARISCQSTSPVSSKSSPRELYEDINDDLKHRNDILSQEVISLRTQVEDLTRKSKSLEAELERTSKQLKEVTTVAADEAGKCKSAKEVIKSLTAQLKEMVERLPEGHNADSSTELCAETTKNILDHSLDVSHIRNTIMLKNEGSSNVANLILPNGAKTQSGKAEWVVQDEPGVFVSLSPQPGGGNELKRVRFSRKHFTEEEAEKWWTENGSKILERHNIVAL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Vium7670g00001 1014 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 467 - -
Vium7670g00001 1014 Gene3D - 13 151 IPR011993 -
Vium7670g00001 1014 Pfam Transcription factor regulating root and shoot growth via Pin3 954 1009 IPR013591 -
Vium7670g00001 1014 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Vium7670g00001 1014 Gene3D - 370 465 IPR009091 -
Vium7670g00001 1014 Gene3D - 177 369 IPR009091 -
Vium7670g00001 1014 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 890 - -
Vium7670g00001 1014 SUPERFAMILY FYVE/PHD zinc finger 633 708 IPR011011 -
Vium7670g00001 1014 SMART fyve_4 629 700 IPR000306 GO:0046872
Vium7670g00001 1014 CDD PH_PLC_plant-like 12 122 - -
Vium7670g00001 1014 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Vium7670g00001 1014 MobiDBLite consensus disorder prediction 131 164 - -
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 580 IPR000408 -
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Vium7670g00001 1014 Coils Coil 811 866 - -
Vium7670g00001 1014 Gene3D - 471 645 IPR009091 -
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Vium7670g00001 1014 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Vium7670g00001 1014 PRINTS Chromosome condensation regulator RCC1 signature 576 597 IPR000408 -
Vium7670g00001 1014 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Vium7670g00001 1014 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Vium7670g00001 1014 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Vium7670g00001 1014 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Vium7670g00001 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 705 IPR013083 -
Vium7670g00001 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 530 577 IPR000408 -
Vium7670g00001 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 582 629 IPR000408 -
Vium7670g00001 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Vium7670g00001 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 480 527 IPR000408 -
Vium7670g00001 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Vium7670g00001 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Vium7670g00001 1014 ProSiteProfiles BRX domain profile. 955 1010 IPR013591 -
Vium7670g00001 1014 SUPERFAMILY RCC1/BLIP-II 245 634 IPR009091 -
Vium7670g00001 1014 SUPERFAMILY PH domain-like 13 121 - -
Vium7670g00001 1014 Pfam FYVE zinc finger 633 699 IPR000306 GO:0046872
Vium7670g00001 1014 MobiDBLite consensus disorder prediction 140 159 - -
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Vium7670g00001 1014 Pfam Transcription factor BRX N-terminal domain 869 897 IPR027988 -
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Vium7670g00001 1014 CDD FYVE_like_SF 642 695 - -
Vium7670g00001 1014 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 637 699 IPR017455 -
Vium7670g00001 1014 Coils Coil 874 894 - -
Vium7670g00001 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7670g00001 Vium-Chr7670 17828 34004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7670g00001 953 1011 Major Intrinsic Protein MIP AT1G31880 49.153 1.38e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7670g00001 - - pvu:PHAVU_003G066900g 1553.88