Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7668g00001 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGGTCGTAGAAGCTCGGAACAACCGTCTTCGGGGGGGAGATACGTGAAGACTCGCGCTGCAGTTGCCAGGGAGGCGGCGGCGGCGGCGGCGGAGAGGCCAAGGACTCGTTTGGCGGCTAAACAATTAGAAGAGGAGAAGCCGGTCATTGTCATATCCGATCATACGAAGAAGAAAGTTGAAGGCGGCGCGATGGGGGATGAGAGTGGTGGCCTGAGTGCAAACAAGGGTGTTGCGCAAGAAGATGATGCTAACCCAGCTCCTTTCCCGGATAGGGTTCAAGTAGGAGGATCGCCTGTCTACAAAGTGGAGAGAAAACTCGGCAAAGGAGGATTTGGACAGGTTTTTGTTGGCAGGCGAGTTACCGGTGGTAACGACCGTACCGCTGGTCCCGGTGCCACTGAGGTGGCTTTGAAATTTGAGCATAGGAACAGCAAAGGATGTAACTATGGCCCTCCTTATGAGTGGCAAGTCTACAACACCCTTGGTGGCAGTCATGGAATACCTAGAGTACACTATAAGGGGAGGCAAGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCTTCAAGCCAGGCAATGTCTGCAGAAATGGTTTCCTGCATTGCAGTGGAGTCCCTGTCAATCTTGGAGAAGATGCACTCTAGAGGCTATGTGCATGGCGATGTAAAGCCGGAGAACTTTTTACTAGGCCAGCCATCTACACCACAAGAAAAGAAACTGTATCTTGTGGACCTTGGATTAGCTACGAAGTGGAGAGACACGTCCAGTGGGCTGCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATCTTGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCCTATACACTCATTTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTCTGCAAAAAGAAGATGGGAACATCGCCTGAGATGCTATGCTGTTTCTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTAAACATGAAATTTGATGAAGAACCTAACTATTCTAAGTTAATTTCTTTGTTTGATGGTATGCTTGGACCAAATCCCGCATTGAGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATACTGAAGAAGAAGATGATTCACAGCCCAAAAAGAAGGTCCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTCTACAATGCAAGACAGCCAATGAAGCAAAGGTATCATTATAATGTAGCGGATGCAAGATTAGCGCAACATGTGGAGAGAGGGATTGCAGATGGGCTCCTCATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGGACTGGTTTTTCCAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACATAAGGAATGGATCATGGAGCAGTGGGAAAAAAACTATTACATTACTTCGATTGCAGGAGCTAATAATGGGAGCTCTCTTGTTGTGATGTCAAAAGGTACGCACTATACACAACAATCATACAAAGTAAGTGATTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTAGAAATTCTGGATACACTGATCAGGTTATTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGAAGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCCGCTCTGATACTGAGCATTCCCAGGCGCAGGCCAGGTGATGAAACCCAGGAAACTTTGCGCACATCTCAATTTCCAAGCACACATGTTAAGAATCCATCAATCAAAGAAACGAAGTCTTTTCGGTTATTGGAAATGATTTCCATTACCAGGTTAGTGGGGTTTCTTTATTAG 2055 0.4594 MPELRSGPRRRRAPVGRRSSEQPSSGGRYVKTRAAVAREAAAAAAERPRTRLAAKQLEEEKPVIVISDHTKKKVEGGAMGDESGGLSANKGVAQEDDANPAPFPDRVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPRVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPSTPQEKKLYLVDLGLATKWRDTSSGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNTEEEDDSQPKKKVRLGVPATQWISVYNARQPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTHYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNSGYTDQVIELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKNPSIKETKSFRLLEMISITRLVGFLY 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7668g00001 684 Pfam Protein kinase domain 115 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7668g00001 684 MobiDBLite consensus disorder prediction 415 429 - -
Vium7668g00001 684 MobiDBLite consensus disorder prediction 1 17 - -
Vium7668g00001 684 ProSiteProfiles Protein kinase domain profile. 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7668g00001 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vium7668g00001 684 CDD STKc_CK1 115 390 - -
Vium7668g00001 684 SMART serkin_6 115 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7668g00001 684 ProSitePatterns Protein kinases ATP-binding region signature. 121 153 IPR017441 GO:0005524
Vium7668g00001 684 Gene3D Transferase(Phosphotransferase) domain 1 88 438 - -
Vium7668g00001 684 SUPERFAMILY Protein kinase-like (PK-like) 115 398 IPR011009 -
Vium7668g00001 684 PANTHER CASEIN KINASE-RELATED 115 647 - -
Vium7668g00001 684 MobiDBLite consensus disorder prediction 1 33 - -
Vium7668g00001 684 FunFam casein kinase 1-like protein HD16 88 433 - -
Vium7668g00001 684 MobiDBLite consensus disorder prediction 401 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7668g00001 Vium-Chr7668 2921 13320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7668g00001 114 276 EF-hand Containing Proteins AT4G35310 26.347 5.66e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vium7668g00001 Pkinase 9.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7668g00001 - - gmx:100819969 1221.84