Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7663g00009 ATGACTAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACTGCAAGGAAATCGACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGGGAACTGACGATTCTGTGTGGGATCCCAGCCTGCGCAATAATTTCATGTCCTTTTGAAGCTAAGCCAGAGATTTGGCCAGATCCTGAGGGAGCAAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTTATTGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTCATTCAGAGGATTGCCAAAGCCCAGGAACAGTTGAAGAAGCTGCGTCAGGAGAATCAAGAGAAGGAGAAGATCTTGTCCTTGTTCAGCTACATGCAAGGTGAAGACCTCCCGACTGATGTTCAAGAACTCAAACAACTCAAAAAGCTCATTGAGAATACTCTGAAGGAAACTAAAATCAAGATGGACGACCTCAATTGTGAGTCTATGTAG 477 0.434 MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISCPFEAKPEIWPDPEGAKQVIQRYLDASVIDESKNVNQESFLIQRIAKAQEQLKKLRQENQEKEKILSLFSYMQGEDLPTDVQELKQLKKLIENTLKETKIKMDDLNCESM 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7663g00009 158 PANTHER MADS BOX PROTEIN 3 150 - -
Vium7663g00009 158 Coils Coil 86 113 - -
Vium7663g00009 158 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Vium7663g00009 158 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Vium7663g00009 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium7663g00009 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium7663g00009 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Vium7663g00009 158 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Vium7663g00009 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 48 IPR002100 GO:0003677|GO:0046983
Vium7663g00009 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium7663g00009 158 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7663g00009 Vium-Chr7663 68770 69762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7663g00009 1 153 MADS-box Gene Family AT5G26630 47.436 7.03e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium7663g00009 SRF-TF 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7663g00009 - - var:108325536 294.278