Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7663g00002 ATGGCTGCCATGAAGCTCATTGCAATATGTCAGTCCGGAGGCAAGTTTTTGACTGAGAAAGACGGTTGTTTGTCATATAAAGGTGGTGATGCTCATGCTATAGACATTGATGATGAAATGAAGTTTGCCGAGTTCAAGGTGGAAGTGGCCGAAATGTTTAATATTAGAACTGATAGCATGTCAATCAAGTATTTCCTACCTGGGAATAAGAAGACTCTCATTACTGTATCTAATGACAAGGATCTGAAGCGAATGATTAAATTTCATGGGAGTTCTTCTACTGTTGATATTTATATCCTTTTTGAAGAGGTAGTTGCCCTTGAGGTATCAAACATGCCTGGCAGTAGGTCAAGCAGAACAACCTTGTCTGAAACAGTAGCACCAGCACCACTCAATGCTTGTCATAGTCATATTGTTGATACTGTGCTTGATCATGATACCAATCAAATTGATACAAATATGGATATGGACATGCTACCGGAAATTTCTCCCTCTCTTCCTCTTCAATCCTCAATCGAAGAGAAGTATGCCAAGGGAGCACAGCAGTGGCAGAATACTATAACAGGGGTGGGTCAAAGGTTCAGTAGTGTACATGAATTTCGAGAATCCTTGCGTAAATATGCCATTGCTCATCAATTTGCTTTCAAATATAAGAAAAATGATAGTCATCGAGTAACTGTTAAATGCAAAGCAGATGGTTGTCCTTGGAGAATTCATGCATCAAGGTTGTCAACCACTCAGTTGATATGTATAAAGAAAATGAATTCAACTCATACCTGTGATGGGGCTTTTGCAACAACGGGGCATCAAGCAACTAGAAGTTGGGTGGCCAGTATTATAAAGGAGAAGTTGAAAGATTTTCCGGATTACAAACCTAAGGACATTGTCAATGACATCAAACAGGAATATGGAATTCAACTGAACTATTTTCAAGCATGGCGTGGGAAAGAGATTGCTAAAGAGCAGCTTCAGGGTTCTTATAAAGAGGCATACAGTCAGTTACCTTTCTTCTGTGAAAAGTTAATGGAGGCTAATCCTGGTAGTCTTGCCATGTGCACAACAAAGGAAGACTCAAGCTTCGATCGTCTCTTTGTATCACTTCATGCTTTGTTGCATGGCTTCCAACAAGGTTGCCGACCACTGATTTTCCTTGATAGCATTCCATTGAGGTCAAAATACCAAGGAACACTGTTAGCAGCAACTTCTGCAGATGCTGATGATGGTGTGTATCCTGTTGCCTTTGCCATTGTTGATGATGCAGAATGTGATGATAGCTGGCATTGGTTCTTACTTCAACTCAAATCAGTGCTTTCAACATCTTGTCCCATAACATTTGTCGCTGACAGAGAGAAGGGGCTGAAAACTTCAATTGCTGAGATATTTGAAGGTTCATTTCATGCATACTGCCTGAGATACTTGAGTGAGCAACTTTTTAGAGACTTGAAAGGACAGTTTTCTCATGAGGTAAAGCGACTCATGATTGAGGATTTATATGCTGCTGCTTATGCCACCAAACCAGAAGGTTTTCACAACTCAATGGAGAGCATTAAAAAGATTTCTGAAGAAGCTTACAATTGGATTATTCAAAGTGAACCTCAGAACTGGGCAAATTCATTTTTTCAGGGTACTAGATATAATCACATGACATCCAACTTTGGGGAGCTCTTTTATAGTTGGGTATCTGATGCAGATGAATTGCCGATAACACAGATGGTCGATGTAATTAGGGGAAAGATTATGGAGTTGATAGTTGCCAGAAAGACTGCATCGGAACAATGGGAAACTAGGCTGAGTCCGTCCATGGAAAATAAGCTTAAAAAAGAAAGTCAAAAAAATCATTCACTTTCAGTTCTGCAATCAACATGTAGCACCTATGAGGTATGTGGTGACACAACTGAGGTGGTTGATATTGACAGGTGGGAATGTAGTTGTAAAGCCTGGCAACTGACTGGTGTGCCATGTTGTCACGCCATTGCCGTAATTGTTGGCATTGGCCAAAGTATTTATGATTATTGCTCCAGATACTGTACAACTGAGAGCTACAGGTTGACGTATTCGGAGATTGTGCATCCAATTTCTGATGTGGAATTGTCTGCTTCCAAAGATTCTCAGCTTGTGGTAACAGTAACACCTCCTCCCACCAAAAGACCTCCTGGTCGACCAGCTACAAAGCGATTTGGACCTCAAGAAGTAGTCAAGCGCCATCTCCATTGCAGCCGATGCAAGGGACTTGGACATAACAAGTCTACTTGCAAGGAGTAA 2262 0.4094 MAAMKLIAICQSGGKFLTEKDGCLSYKGGDAHAIDIDDEMKFAEFKVEVAEMFNIRTDSMSIKYFLPGNKKTLITVSNDKDLKRMIKFHGSSSTVDIYILFEEVVALEVSNMPGSRSSRTTLSETVAPAPLNACHSHIVDTVLDHDTNQIDTNMDMDMLPEISPSLPLQSSIEEKYAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFKYKKNDSHRVTVKCKADGCPWRIHASRLSTTQLICIKKMNSTHTCDGAFATTGHQATRSWVASIIKEKLKDFPDYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKLMEANPGSLAMCTTKEDSSFDRLFVSLHALLHGFQQGCRPLIFLDSIPLRSKYQGTLLAATSADADDGVYPVAFAIVDDAECDDSWHWFLLQLKSVLSTSCPITFVADREKGLKTSIAEIFEGSFHAYCLRYLSEQLFRDLKGQFSHEVKRLMIEDLYAAAYATKPEGFHNSMESIKKISEEAYNWIIQSEPQNWANSFFQGTRYNHMTSNFGELFYSWVSDADELPITQMVDVIRGKIMELIVARKTASEQWETRLSPSMENKLKKESQKNHSLSVLQSTCSTYEVCGDTTEVVDIDRWECSCKAWQLTGVPCCHAIAVIVGIGQSIYDYCSRYCTTESYRLTYSEIVHPISDVELSASKDSQLVVTVTPPPTKRPPGRPATKRFGPQEVVKRHLHCSRCKGLGHNKSTCKE 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7663g00002 753 CDD PB1_UP2 9 99 - -
Vium7663g00002 753 Gene3D - 25 101 - -
Vium7663g00002 753 PANTHER POLYPROTEIN, PUTATIVE-RELATED 178 724 - -
Vium7663g00002 753 Pfam MuDR family transposase 186 251 IPR004332 -
Vium7663g00002 753 Pfam MULE transposase domain 383 474 IPR018289 -
Vium7663g00002 753 SMART 26again6 640 667 IPR006564 GO:0008270
Vium7663g00002 753 Pfam SWIM zinc finger 635 661 IPR007527 GO:0008270
Vium7663g00002 753 ProSiteProfiles Zinc finger SWIM-type profile. 625 665 IPR007527 GO:0008270
Vium7663g00002 753 SUPERFAMILY CAD & PB1 domains 21 94 - -
Vium7663g00002 753 SMART PB1_new 19 102 IPR000270 GO:0005515
Vium7663g00002 753 Pfam PB1 domain 24 92 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7663g00002 Vium-Chr7663 5369 8961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7663g00002 9 87 MAP Kinase Kinase Kinase AT2G35050 34.568 5.97e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7663g00002 K17604 - gmx:100797259 1363.98