Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium765g00001 ATGACTAGAGCCAAGATCGAACTTGCTTACATAACAGATCCTGCAAAGAGGAAAGCAACTTTCAAGAAAAGGAAAAATGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTTTGTGGGATTGATGCATGTGCTGTAGTGTATAGTCCTGATCTGCCTAACAAGCCAGAGGTTTGGCCATCTGAATCAGAAGCCAGAAGTGTGATTTCCAAGTTCAATGGTGTGCCTGAGGCTGAGAAAAGAAAGAAAATGTTCTGCCAAGAAAGCTTTTTAAGACAGAGAATTGACAAAGGCAAAGAGCAGCTGAAGAAACTGAAGAATGAAAATAGGAAGAGGGAGATTAACCTTCTCATGTGTGAATACCTCACTCATGGAGGCAACAACCTTGACAGTAACAACATGAGTTATCTCAAGGACTTTTCATTCTTCACTGATCAAAATTTGGATGAAATTAGAAACAAAATCACTATGCTCCAAACCCAAGAGGAGACACCAGAAACCATGGATCAAGGAGAGCAGGCACAGGTTCATGTGCCAAAGACCAATTTTTCTAGAAAAATAATAAAAAAACTAAATTAG 579 0.3903 MTRAKIELAYITDPAKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPDLPNKPEVWPSESEARSVISKFNGVPEAEKRKKMFCQESFLRQRIDKGKEQLKKLKNENRKREINLLMCEYLTHGGNNLDSNNMSYLKDFSFFTDQNLDEIRNKITMLQTQEETPETMDQGEQAQVHVPKTNFSRKIIKKLN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium765g00001 192 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Vium765g00001 192 Coils Coil 88 115 - -
Vium765g00001 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium765g00001 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium765g00001 192 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vium765g00001 192 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vium765g00001 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vium765g00001 192 PANTHER MADS BOX PROTEIN 3 157 - -
Vium765g00001 192 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vium765g00001 192 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vium765g00001 192 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium765g00001 Vium-Chr765 5547 6327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium765g00001 1 151 Type I MADS-box Gene Family AT3G05860 44.371 4.53e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium765g00001 SRF-TF 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium765g00001 - - vra:106752448 201.83