Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7658g00004 ATGTTCCCACATACCCTTATTACTGCCGCTGCCCTTCAACACATGTTGCAACATCATCATCACTTTCCAACCCCAATGGAACAACGTTCGAGGTGGAAACCCAACATTGAGGTCGCGCCCAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTTTGTTACTACAATAACTACAGCTTGTCGCAGCCCCGCTATTTCTGCAAAGCCTGCAGACGCTACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGAAAGAACCGCCGCGGCAAGTCCTCCTCGCGCCACAACCAAACCCAACGCTCTTTCGTCTCCGCTTCTTCTGATGACACCGAGTCTTCACCTGAAGATGCCCATCGAAACAACAACGGCTCTCGTGAAATAGACATGGCCCTTGTGTTCGCCAAATTCTTGAACCCGAAACAAAACGTTGGAGAGGATAACAATGCCTCCTCTTCTTCCAACAATTACTTCACACCGCCCGGCGTTCAAACGGAGAATGATATCGCTGTTGTTCAGTCGCCGAACAAGGGTTTGTCGTCGGATCCTGTCATTGTTGACTCCGATGCAGTAGTGGCAATTGAGAATTTCGGTAGGGAGGAATTGAGTTTGGGTGAGATTGACGAGTTGGAGAAGCTTCTGGGTGTGAGTGGTGATGAAGATGGTCTTTGGTGTGATGCTACCTTGTCCTCTTCCGTTACTTGGGAAGCACCCGTGAAGGAAATGCAGTTGCAGGAATTGGAATACTCGATGCCGTTGAATGAAAACGATGCCCAATTATTGCCCATCACTTCTGCGTCTACCCTGCATTCAATGAGTGACACTTGCTGGAGCACTTGGAGCTCCTTTGATCTTTCAGCCATGGAAGTGTTCTCATCAACTCCTTGA 903 0.505 MFPHTLITAAALQHMLQHHHHFPTPMEQRSRWKPNIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRGKSSSRHNQTQRSFVSASSDDTESSPEDAHRNNNGSREIDMALVFAKFLNPKQNVGEDNNASSSSNNYFTPPGVQTENDIAVVQSPNKGLSSDPVIVDSDAVVAIENFGREELSLGEIDELEKLLGVSGDEDGLWCDATLSSSVTWEAPVKEMQLQELEYSMPLNENDAQLLPITSASTLHSMSDTCWSTWSSFDLSAMEVFSSTP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7658g00004 300 MobiDBLite consensus disorder prediction 148 167 - -
Vium7658g00004 300 MobiDBLite consensus disorder prediction 101 116 - -
Vium7658g00004 300 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Vium7658g00004 300 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Vium7658g00004 300 Pfam Dof domain, zinc finger 40 94 IPR003851 GO:0003677|GO:0006355
Vium7658g00004 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 167 IPR045174 GO:0003700|GO:0006355
Vium7658g00004 300 MobiDBLite consensus disorder prediction 84 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7658g00004 Vium-Chr7658 29579 31146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7658g00004 32 292 C2C2-Dof Transcription Factor Family AT3G52440 38.603 3.37e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium7658g00004 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7658g00004 - - vra:106778892 583.948